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TNF_receptor-like_protein_CrmB

Euk-Vir

Cotia_virus_SPAn232

TNF_receptor-like_protein_CrmB__YP_005296367__Cotia_virus_SPAn232__930275

Identity

Accession:
YP_005296367 ↗
Protein ID:
TNF_receptor-like_protein_CrmB
Kingdom:
euk

Quality

83.6 mean pLDDT

Taxonomy

Bamfordvirae› Nucleocytoviricota› Pokkesviricetes› Chitovirales› Poxviridae› Oryzopoxvirus› Cotia_virus_SPAn232

TaxID: 930275

Cluster

View cluster (92 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 24-164
PDB
Domain cluster: rep: Viral_TNFR_II-like_c-terminal_fragment__YP_227393__Deerpox_virus_W-848-83__305674__D31-193
CATH (22)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3on9A00 2.60.240.20 Mainly Beta › Sandwich › Viral Chemokine Inhibitor; Chain A › 0.88 83.0 7.89e-01 100.0% 86.3%
4hkjD00 2.60.240.30 Mainly Beta › Sandwich › Viral Chemokine Inhibitor; Chain A › 0.77 71.0 6.37e-01 97.2% 80.1%
1cq3A00 2.60.240.10 Mainly Beta › Sandwich › Viral Chemokine Inhibitor; Chain A › Major secreted virus protein 0.75 71.0 5.96e-01 100.0% 80.8%
2vgaA00 2.60.240.10 Mainly Beta › Sandwich › Viral Chemokine Inhibitor; Chain A › Major secreted virus protein 0.74 70.0 6.21e-01 100.0% 86.6%
2xcmC00 2.60.40.790 Mainly Beta › Sandwich › Immunoglobulin-like › 0.67 39.0 4.69e-01 77.3% 87.0%
4i0kA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.65 37.0 4.37e-01 75.2% 82.1%
2bc4A02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.63 38.0 4.22e-01 93.6% 75.2%
4feiA00 2.60.40.790 Mainly Beta › Sandwich › Immunoglobulin-like › 0.62 38.0 4.40e-01 95.7% 83.3%
1dr9A02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.61 34.0 4.03e-01 75.2% 78.9%
2dc1A02 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.59 34.0 3.93e-01 100.0% 78.2%
2b5iB01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.59 36.0 4.21e-01 97.9% 89.4%
3o0lA00 2.60.40.3230 Mainly Beta › Sandwich › Immunoglobulin-like › 0.59 34.0 3.79e-01 91.5% 72.5%
4ofkB00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.58 34.0 3.84e-01 75.2% 76.0%
4ktpA01 2.70.98.40 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › Glycoside hydrolase, family 65, N-terminal domain 0.57 49.0 4.08e-01 92.9% 82.4%
3blcA00 2.70.98.90 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.57 48.0 3.91e-01 92.9% 87.9%
7zgmA01 2.70.98.10 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.54 45.0 3.85e-01 92.2% 85.7%
2r4fA03 3.30.70.420 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Hydroxymethylglutaryl-CoA reductase, class I/II, NAD/NADP-binding domain 0.53 42.0 4.61e-01 95.7% 100.0%
4eqaC00 2.40.128.650 Mainly Beta › Beta Barrel › Lipocalin › 0.53 35.0 3.47e-01 94.3% 62.0%
3a0oA03 2.70.98.70 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.53 45.0 3.62e-01 93.6% 78.3%
4qq1C03 2.40.128.240 Mainly Beta › Beta Barrel › Lipocalin › 0.52 31.0 3.88e-01 93.6% 96.6%
1tuwA00 3.30.70.1090 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Dimeric alpha+beta barrel. 0.51 37.0 4.20e-01 92.9% 98.1%
4u3vA00 3.10.129.110 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Polyketide synthase dehydratase 0.51 40.0 3.37e-01 90.8% 48.8%
ECOD (21)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
146301 527.1.1.3 ↗ beta sandwiches › Soluble secreted chemokine inhibitor, VCCI › Soluble secreted chemokine inhibitor, VCCI › Soluble secreted chemokine inhibitor, VCCI › CrmD_SECRET 0.88 83.0 7.89e-01 100.0% 86.3%
4855718 527.1.1.1 ↗ beta sandwiches › Soluble secreted chemokine inhibitor, VCCI › Soluble secreted chemokine inhibitor, VCCI › Soluble secreted chemokine inhibitor, VCCI › Orthopox_35kD 0.75 70.0 6.23e-01 100.0% 86.2%
5023279 304.3.1.0 ↗ a+b two layers › Alpha-beta plaits › HMA-related › HMA, heavy metal-associated domain 0.70 32.0 4.67e-01 89.4% 100.0%
4988966 304.8.1.8 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT_4 0.67 36.0 4.82e-01 90.8% 98.7%
4513450 319.1.1.0 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones 0.66 44.0 5.02e-01 71.6% 90.5%
4028760 319.1.1.3 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › CS 0.66 43.0 4.70e-01 70.2% 80.0%
3251123 319.1.1.3 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › CS 0.65 40.0 4.62e-01 77.3% 85.0%
3829402 304.8.1.0 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.65 33.0 4.28e-01 79.4% 86.3%
4553383 319.1.1.27 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › DUF5450 0.64 32.0 4.24e-01 92.2% 92.9%
3401923 11.1.1.108 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › C2-set_2 0.63 36.0 4.00e-01 74.5% 70.0%
5083785 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.61 32.0 4.03e-01 97.9% 86.3%
3585759 11.1.1.108 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › C2-set_2 0.58 35.0 3.96e-01 75.2% 78.1%
4957801 12.3.1.40 ↗ beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › TREH_N 0.57 49.0 4.34e-01 93.6% 84.3%
4961936 12.3.1.77 ↗ beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › PF25978 0.57 49.0 3.96e-01 92.9% 78.5%
4622524 12.3.1.24 ↗ beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › YidC_periplas 0.57 48.0 3.89e-01 92.2% 88.7%
4620494 12.3.1.24 ↗ beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › YidC_periplas 0.57 48.0 3.86e-01 92.2% 90.2%
5056389 12.3.1.74 ↗ beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › GDE_N 0.56 47.0 3.92e-01 92.9% 86.2%
4969672 12.3.1.0 ↗ beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich 0.56 47.0 4.06e-01 93.6% 89.6%
3258614 12.3.1.40 ↗ beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › TREH_N 0.54 46.0 4.20e-01 91.5% 91.4%
3269736 331.4.1.1 ↗ a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 › KA1 0.52 29.0 3.49e-01 98.6% 83.3%
3237408 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.50 37.0 3.72e-01 91.5% 75.2%