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Threonylcarbamoyl_AMP_synthase
Euk-VirPandoravirus_salinus
Threonylcarbamoyl_AMP_synthase__YP_009430141__Pandoravirus_salinus__1349410
Identity
- Accession:
- YP_009430141 ↗
- Protein ID:
- Threonylcarbamoyl_AMP_synthase
- Kingdom:
- euk
Quality
86.2
mean pLDDT
Cluster
View cluster (4 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 40-168_346-386
Domain cluster:
rep: ON470612.1__URC10023.1__X__00006__D2-119_287-298
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00814.32 best | TsaD | 81.3 | 1.40e-22 | 58.8% | 36.4% |
D2
high
residues 206-341
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00814.32 best | TsaD | 42.2 | 1.20e-10 | 99.3% | 38.6% |
CATH (23)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2ivnA02 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.91 | 79.0 | 7.50e-01 | 100.0% | 78.3% |
| 3zeuB02 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.88 | 81.0 | 7.46e-01 | 100.0% | 78.8% |
| 3wuhA02 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.81 | 75.0 | 6.89e-01 | 100.0% | 79.2% |
| 7vyjB01 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.78 | 74.0 | 6.53e-01 | 100.0% | 75.8% |
| 3ttcA04 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.75 | 65.0 | 5.29e-01 | 100.0% | 50.4% |
| 6jdbA02 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.75 | 50.0 | 4.81e-01 | 100.0% | 60.1% |
| 4qs8A01 | 3.40.367.20 | Alpha Beta › 3-Layer(aba) Sandwich › Hexokinase; domain 1 › | 0.74 | 52.0 | 4.07e-01 | 72.1% | 96.8% |
| 2itmB02 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.70 | 56.0 | 4.64e-01 | 100.0% | 48.7% |
| 4bgbA02 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.70 | 62.0 | 5.61e-01 | 100.0% | 70.3% |
| 1huxA02 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.70 | 52.0 | 5.15e-01 | 100.0% | 74.3% |
| 2f9wA02 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.68 | 45.0 | 4.77e-01 | 100.0% | 76.3% |
| 3h1qA02 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.67 | 42.0 | 4.56e-01 | 100.0% | 74.8% |
| 3gg4A02 | 1.20.58.2240 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.66 | 61.0 | 5.59e-01 | 100.0% | 80.7% |
| 3ll3B02 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.64 | 54.0 | 4.45e-01 | 100.0% | 50.6% |
| 3i8bA02 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.64 | 53.0 | 4.50e-01 | 100.0% | 54.2% |
| 2f07B00 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.56 | 39.0 | 3.44e-01 | 70.6% | 77.0% |
| 2xq2A01 | 1.20.1730.10 | Mainly Alpha › Up-down Bundle › Sodium/glucose cotransporter › Sodium/glucose cotransporter | 0.54 | 43.0 | 2.88e-01 | 84.6% | 48.2% |
| 1dnpA01 | 3.40.50.620 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs | 0.53 | 35.0 | 3.63e-01 | 100.0% | 70.0% |
| 4gc0A01 | 1.20.1250.20 | Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › MFS general substrate transporter like domains | 0.51 | 41.0 | 3.41e-01 | 86.0% | 61.4% |
| 7zh0A01 | 1.20.1250.20 | Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › MFS general substrate transporter like domains | 0.51 | 45.0 | 3.27e-01 | 97.1% | 78.8% |
| 1qmgA02 | 1.10.1040.10 | Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 | 0.51 | 37.0 | 2.91e-01 | 75.7% | 95.9% |
| 7vwtA01 | 1.10.600.10 | Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase | 0.51 | 36.0 | 2.74e-01 | 72.8% | 82.9% |
| 5ziyA01 | 1.20.1330.10 | Mainly Alpha › Up-down Bundle › f41 fragment of flagellin, N-terminal domain › f41 fragment of flagellin, N-terminal domain | 0.50 | 37.0 | 3.32e-01 | 77.2% | 76.3% |
ECOD (39)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3466452 | 2484.1.1.10 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › TsaD | 0.90 | 87.0 | 6.77e-01 | 100.0% | 57.7% |
| 4616268 | 2484.1.1.10 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › TsaD | 0.90 | 81.0 | 7.10e-01 | 100.0% | 67.4% |
| 3416550 | 2484.1.1.10 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › TsaD | 0.90 | 86.0 | 6.66e-01 | 100.0% | 58.9% |
| 3937876 | 2484.1.1.10 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › TsaD | 0.89 | 85.0 | 6.80e-01 | 100.0% | 58.8% |
| 4029485 | 2484.1.1.10 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › TsaD | 0.88 | 84.0 | 5.66e-01 | 100.0% | 35.7% |
| 4358375 | 2484.1.1.10 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › TsaD | 0.88 | 84.0 | 6.85e-01 | 100.0% | 59.1% |
| 3217430 | 2484.1.1.10 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › TsaD | 0.88 | 84.0 | 6.58e-01 | 100.0% | 56.9% |
| 4128947 | 2484.1.1.10 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › TsaD | 0.87 | 83.0 | 6.78e-01 | 100.0% | 61.4% |
| 3974538 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.86 | 82.0 | 6.80e-01 | 100.0% | 62.3% |
| 4089762 | 2484.1.1.10 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › TsaD | 0.85 | 80.0 | 6.66e-01 | 100.0% | 61.9% |
| 3689247 | 2484.1.1.10 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › TsaD | 0.84 | 80.0 | 6.29e-01 | 100.0% | 65.8% |
| 4504181 | 2484.1.1.10 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › TsaD | 0.84 | 80.0 | 6.96e-01 | 100.0% | 69.7% |
| 4107955 | 2484.1.1.10 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › TsaD | 0.84 | 78.0 | 5.66e-01 | 100.0% | 39.7% |
| 3166896 | 2484.1.1.10 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › TsaD | 0.84 | 79.0 | 5.57e-01 | 100.0% | 41.3% |
| 3724786 | 2484.1.1.41 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › AnmK | 0.72 | 65.0 | 5.61e-01 | 100.0% | 63.3% |
| 4980794 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.72 | 65.0 | 5.32e-01 | 100.0% | 54.3% |
| 4303037 | 2484.1.1.41 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › AnmK | 0.71 | 64.0 | 5.85e-01 | 100.0% | 73.9% |
| 4101540 | 2484.1.1.41 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › AnmK | 0.70 | 62.0 | 5.26e-01 | 100.0% | 59.5% |
| 4054263 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.68 | 62.0 | 5.12e-01 | 100.0% | 56.2% |
| 4967139 | 2484.1.1.137 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DUF2114 | 0.67 | 60.0 | 4.28e-01 | 100.0% | 33.1% |
| 3948016 | 2484.1.1.32 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › FGGY_C | 0.66 | 60.0 | 4.80e-01 | 100.0% | 54.0% |
| 3967012 | 2484.1.1.32 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › FGGY_C | 0.64 | 54.0 | 4.49e-01 | 100.0% | 51.9% |
| 3714252 | 603.1.1.0 ↗ | alpha bundles › STAT-like › t-snare proteins › t-snare proteins | 0.62 | 48.0 | 3.84e-01 | 80.9% | 72.8% |
| 3592428 | 192.7.1.0 ↗ | alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm | 0.61 | 39.0 | 3.83e-01 | 77.2% | 60.0% |
| 4471187 | 3236.2.1.11 ↗ | alpha complex topology › Cation-proton antiporter › Sodium-dependent citrate symporter › Sodium-dependent citrate symporter › Cons_hypoth698 | 0.61 | 48.0 | 3.65e-01 | 84.6% | 67.0% |
| 11180 | 2484.1.1.70 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › FtsA | 0.61 | 49.0 | 4.41e-01 | 100.0% | 62.7% |
| 3733618 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.60 | 54.0 | 4.71e-01 | 100.0% | 66.2% |
| 3838712 | 2484.1.1.245 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › SHS2_FTSA, PilM_2, FtsA | 0.60 | 50.0 | 3.49e-01 | 100.0% | 28.8% |
| 3188923 | 2484.1.1.220 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › PF27033 | 0.58 | 54.0 | 4.44e-01 | 100.0% | 69.8% |
| 3689980 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.57 | 53.0 | 4.45e-01 | 100.0% | 71.4% |
| 4963441 | 2484.1.1.340 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Volactin | 0.55 | 49.0 | 4.36e-01 | 100.0% | 70.3% |
| 3693411 | 5069.1.1.4 ↗ | alpha bundles › Transmembrane heme-binding four-helical bundle › Transmembrane heme-binding four-helical bundle › Transmembrane di-heme cytochromes › Ferric_reduct | 0.54 | 47.0 | 3.88e-01 | 91.2% | 71.3% |
| 4626183 | 5051.1.1.2 ↗ | alpha complex topology › Sodium:neurotransmitter symporter family (SNF)-like › Sodium:neurotransmitter symporter family (SNF)-like › Sodium:neurotransmitter symporter family (SNF)-like › AA_permease | 0.54 | 44.0 | 3.07e-01 | 86.8% | 54.8% |
| 3252505 | 5050.1.1.9 ↗ | alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › MFS_1 | 0.53 | 47.0 | 3.29e-01 | 98.5% | 91.5% |
| 3847309 | 2484.1.1.1 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › HSP70 | 0.52 | 47.0 | 4.06e-01 | 100.0% | 62.9% |
| 3783691 | 2484.1.1.1 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › HSP70 | 0.51 | 46.0 | 3.98e-01 | 100.0% | 63.3% |
| 3690688 | 5050.1.1.0 ↗ | alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter | 0.51 | 42.0 | 3.75e-01 | 88.2% | 70.3% |
| 3945884 | 2484.1.1.1 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › HSP70 | 0.51 | 47.0 | 3.82e-01 | 100.0% | 73.1% |
| 3732773 | 2484.1.1.220 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › PF27033 | 0.51 | 44.0 | 3.86e-01 | 100.0% | 62.9% |
D3
high
residues 391-610
Domain cluster:
rep: IMGVR_UViG_3300042094_000363-3300042094-Ga0453242_007407_1_669__D52-217
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF01300.25 best | Sua5_yciO_yrdC | 164.2 | 3.00e-48 | 82.7% | 99.4% |
D4
high
residues 645-750
Domain cluster:
rep: Threonylcarbamoyl_AMP_synthase__YP_009483771__Pandoravirus_quercus__2107709__D644-748
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF03481.20 best | Sua5_C | 41.4 | 2.90e-10 | 94.3% | 60.0% |
D5
high
residues 774-1006
Domain cluster:
rep: ON548429__URC17455.1__X__00151__D178-370
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00899.28 best | ThiF | 113.3 | 1.50e-32 | 99.1% | 77.7% |