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Threonylcarbamoyl_AMP_synthase
Euk-VirPandoravirus_macleodensis
Threonylcarbamoyl_AMP_synthase__YP_009481386__Pandoravirus_macleodensis__2107707
Identity
- Accession:
- YP_009481386 ↗
- Protein ID:
- Threonylcarbamoyl_AMP_synthase
- Kingdom:
- euk
Quality
86.7
mean pLDDT
Cluster
View cluster (4 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 40-170_345-377
Domain cluster:
rep: ON470612.1__URC10023.1__X__00006__D2-119_287-298
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00814.32 best | TsaD | 79.7 | 4.20e-22 | 69.5% | 39.4% |
D2
high
residues 410-613
Domain cluster:
rep: IMGVR_UViG_3300042094_000363-3300042094-Ga0453242_007407_1_669__D52-217
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF01300.25 best | Sua5_yciO_yrdC | 168.6 | 1.30e-49 | 90.2% | 99.4% |
D3
high
residues 648-752
Domain cluster:
rep: Threonylcarbamoyl_AMP_synthase__YP_009483771__Pandoravirus_quercus__2107709__D644-748
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF03481.20 best | Sua5_C | 45.0 | 2.40e-11 | 94.3% | 60.8% |
D4
high
residues 764-1002
Domain cluster:
rep: ON548429__URC17455.1__X__00151__D178-370
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00899.28 best | ThiF | 112.0 | 3.70e-32 | 96.7% | 72.3% |
D5
medium
residues 171-243_306-319_333-343
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00814.32 best | TsaD | 43.4 | 4.90e-11 | 88.8% | 23.1% |
CATH (19)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3wuhA02 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.85 | 79.0 | 6.44e-01 | 98.0% | 98.8% |
| 3zeuB02 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.81 | 76.0 | 6.21e-01 | 98.0% | 98.8% |
| 2ivnA02 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.79 | 74.0 | 6.14e-01 | 99.0% | 98.7% |
| 5ly3A02 | 3.30.420.570 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › | 0.70 | 64.0 | 4.85e-01 | 100.0% | 98.2% |
| 2i7nA02 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.67 | 61.0 | 5.23e-01 | 100.0% | 80.6% |
| 2zgyA02 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.65 | 58.0 | 5.16e-01 | 99.0% | 99.3% |
| 2fsjA02 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.61 | 54.0 | 4.86e-01 | 100.0% | 100.0% |
| 3js6A02 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.57 | 51.0 | 4.81e-01 | 100.0% | 98.3% |
| 1nbwA04 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.57 | 50.0 | 4.58e-01 | 100.0% | 98.5% |
| 3c0bA02 | 3.30.420.190 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › conserved archaeal protein q6m145 | 0.57 | 50.0 | 3.90e-01 | 100.0% | 79.5% |
| 3h6eB01 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.56 | 49.0 | 4.94e-01 | 99.0% | 94.9% |
| 4bg8A01 | 3.30.420.430 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › | 0.55 | 50.0 | 4.54e-01 | 100.0% | 75.2% |
| 4o5fA01 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.54 | 41.0 | 3.69e-01 | 100.0% | 58.8% |
| 3hz6A01 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.54 | 49.0 | 3.61e-01 | 99.0% | 93.6% |
| 6m90A02 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.53 | 36.0 | 2.64e-01 | 70.4% | 63.1% |
| 1u6zA02 | 3.30.420.150 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Exopolyphosphatase. Domain 2 | 0.53 | 47.0 | 3.92e-01 | 100.0% | 87.2% |
| 3sc7X01 | 2.115.10.20 | Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 | 0.52 | 36.0 | 2.59e-01 | 74.5% | 71.4% |
| 3bexA01 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.51 | 42.0 | 3.73e-01 | 100.0% | 62.5% |
| 3hrgA02 | 3.30.420.260 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Protein of unknown function DUF3822, C-terminal domain | 0.51 | 40.0 | 3.84e-01 | 100.0% | 72.8% |
ECOD (50)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3476736 | 2484.1.1.10 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › TsaD | 0.91 | 88.0 | 6.09e-01 | 100.0% | 72.0% |
| 3416550 | 2484.1.1.10 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › TsaD | 0.90 | 87.0 | 6.07e-01 | 100.0% | 72.1% |
| 3466452 | 2484.1.1.10 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › TsaD | 0.90 | 87.0 | 6.09e-01 | 100.0% | 71.2% |
| 3994856 | 2484.1.1.10 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › TsaD | 0.90 | 85.0 | 6.17e-01 | 98.0% | 77.8% |
| 3937876 | 2484.1.1.10 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › TsaD | 0.90 | 86.0 | 6.14e-01 | 100.0% | 73.1% |
| 3217430 | 2484.1.1.10 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › TsaD | 0.89 | 83.0 | 5.89e-01 | 98.0% | 69.8% |
| 3743477 | 2484.1.1.10 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › TsaD | 0.89 | 85.0 | 6.11e-01 | 100.0% | 76.7% |
| 4358375 | 2484.1.1.10 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › TsaD | 0.88 | 85.0 | 6.18e-01 | 100.0% | 74.3% |
| 3784275 | 2484.1.1.10 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › TsaD | 0.88 | 84.0 | 5.92e-01 | 100.0% | 77.3% |
| 4616123 | 2484.1.1.10 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › TsaD | 0.88 | 60.0 | 4.42e-01 | 74.5% | 30.0% |
| 3184351 | 2484.1.1.10 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › TsaD | 0.88 | 83.0 | 5.75e-01 | 100.0% | 85.6% |
| 3208119 | 2484.1.1.10 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › TsaD | 0.88 | 84.0 | 5.75e-01 | 100.0% | 81.0% |
| 3166896 | 2484.1.1.10 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › TsaD | 0.87 | 82.0 | 5.33e-01 | 100.0% | 50.7% |
| 4128947 | 2484.1.1.10 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › TsaD | 0.87 | 83.0 | 6.06e-01 | 100.0% | 79.8% |
| 3689247 | 2484.1.1.10 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › TsaD | 0.86 | 82.0 | 5.82e-01 | 100.0% | 79.2% |
| 4391331 | 2484.1.1.10 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › TsaD | 0.84 | 81.0 | 6.05e-01 | 100.0% | 78.6% |
| 3974538 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.84 | 80.0 | 5.97e-01 | 100.0% | 78.6% |
| None | — | 0.83 | 79.0 | 5.84e-01 | 100.0% | 80.9% | |
| 4853039 | 2484.1.1.10 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › TsaD | 0.83 | 59.0 | 6.76e-01 | 73.5% | 98.6% |
| 4089762 | 2484.1.1.10 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › TsaD | 0.83 | 79.0 | 5.89e-01 | 100.0% | 78.1% |
| 4492619 | 2484.1.1.10 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › TsaD | 0.83 | 79.0 | 5.94e-01 | 100.0% | 79.4% |
| 4575901 | 2484.1.1.10 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › TsaD | 0.82 | 79.0 | 5.14e-01 | 100.0% | 50.4% |
| 4371758 | 2484.1.1.10 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › TsaD | 0.82 | 79.0 | 5.84e-01 | 100.0% | 75.7% |
| None | — | 0.82 | 78.0 | 5.19e-01 | 100.0% | 49.0% | |
| 4133401 | 2484.1.1.10 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › TsaD | 0.82 | 78.0 | 5.12e-01 | 100.0% | 48.5% |
| 4107955 | 2484.1.1.10 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › TsaD | 0.82 | 78.0 | 5.18e-01 | 100.0% | 50.1% |
| 4616268 | 2484.1.1.10 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › TsaD | 0.82 | 78.0 | 6.06e-01 | 100.0% | 85.8% |
| 4370096 | 2484.1.1.10 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › TsaD | 0.82 | 77.0 | 5.78e-01 | 100.0% | 78.0% |
| 4555445 | 2484.1.1.10 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › TsaD | 0.82 | 77.0 | 5.73e-01 | 100.0% | 76.4% |
| 4060448 | 2484.1.1.10 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › TsaD | 0.81 | 76.0 | 5.57e-01 | 100.0% | 76.7% |
| 4303479 | 2484.1.1.10 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › TsaD | 0.81 | 77.0 | 5.76e-01 | 100.0% | 79.1% |
| 4504181 | 2484.1.1.10 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › TsaD | 0.81 | 76.0 | 5.89e-01 | 100.0% | 87.7% |
| 4621629 | 2484.1.1.10 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › TsaD | 0.80 | 75.0 | 5.51e-01 | 100.0% | 75.1% |
| 4113840 | 2484.1.1.10 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › TsaD | 0.78 | 75.0 | 5.74e-01 | 100.0% | 82.1% |
| 3169550 | 2484.1.1.39 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Fumble | 0.70 | 64.0 | 4.75e-01 | 100.0% | 78.4% |
| 4981065 | 2484.1.1.21 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › BcrAD_BadFG | 0.67 | 61.0 | 4.99e-01 | 100.0% | 83.4% |
| 4418050 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.65 | 59.0 | 3.93e-01 | 100.0% | 39.0% |
| 5005743 | 2484.1.1.87 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › MreB-like_C | 0.64 | 57.0 | 4.67e-01 | 99.0% | 78.4% |
| 4945490 | 2484.1.1.334 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DUF1786 | 0.62 | 55.0 | 3.72e-01 | 99.0% | 60.6% |
| 11196 | 2484.1.1.56 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDR | 0.61 | 55.0 | 4.35e-01 | 100.0% | 86.2% |
| 3947630 | 2484.1.1.56 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDR | 0.60 | 53.0 | 3.47e-01 | 100.0% | 39.3% |
| 4257154 | 220.1.1.126 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › Ycf4 | 0.58 | 33.0 | 3.27e-01 | 87.8% | 51.9% |
| 4953954 | 2484.1.1.334 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DUF1786 | 0.58 | 51.0 | 3.53e-01 | 99.0% | 60.3% |
| 3213163 | 2484.1.1.162 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › F-box | 0.56 | 43.0 | 3.91e-01 | 99.0% | 61.5% |
| 4144852 | 220.1.1.126 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › Ycf4 | 0.55 | 34.0 | 3.35e-01 | 99.0% | 56.5% |
| 3967001 | 2484.1.1.6 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › FGGY_N | 0.54 | 47.0 | 3.63e-01 | 99.0% | 93.6% |
| 3949916 | 2484.1.1.29 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Ppx-GppA | 0.53 | 47.0 | 3.82e-01 | 100.0% | 88.4% |
| 3206461 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.53 | 46.0 | 3.44e-01 | 99.0% | 94.0% |
| 3196233 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.52 | 45.0 | 3.89e-01 | 98.0% | 86.5% |
| 4021862 | 7575.1.1.9 ↗ | a/b three-layered sandwiches › Caspase-like › Caspase-like › Caspase-like › CHAT | 0.50 | 44.0 | 3.07e-01 | 100.0% | 33.3% |
D6
medium
residues 244-305_320-332
Domain cluster:
representative