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Thymidine_kinase

Euk-Vir

African_swine_fever_virus

Thymidine_kinase__YP_009703106__African_swine_fever_virus__10497

Identity

Accession:
YP_009703106 ↗
Protein ID:
Thymidine_kinase
Kingdom:
euk

Quality

84.8 mean pLDDT

Taxonomy

Bamfordvirae› Nucleocytoviricota› Pokkesviricetes› Asfuvirales› Asfarviridae› Asfivirus› African_swine_fever_virus

TaxID: 10497

Cluster

View cluster (85 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-141
PDB
Domain cluster: rep: NC_021330__YP_008059651.1__M202-gp129__00089__D21-171
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF00265.25 best TK 150.7 5.30e-44 95.0% 76.1%
D2 high residues 144-190
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF00265.25 best TK 42.7 8.00e-11 85.1% 21.6%
CATH (11)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1w4rA02 3.30.60.20 Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 › 0.94 77.0 8.12e-01 89.4% 97.6%
4e1pA00 3.30.60.230 Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 › Lsr2, dimerisation domain 0.75 61.0 5.74e-01 100.0% 74.5%
3m7kA00 3.30.40.220 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › 0.68 59.0 4.20e-01 100.0% 41.5%
2qgpA00 1.10.30.50 Mainly Alpha › Orthogonal Bundle › DNA Binding (I), subunit A › 0.66 56.0 4.75e-01 100.0% 57.8%
3jyuB01 3.30.2230.10 Alpha Beta › 2-Layer Sandwich › DUSP-like › DUSP-like 0.64 48.0 3.72e-01 91.5% 70.9%
7po9A01 3.40.1800.20 Alpha Beta › 3-Layer(aba) Sandwich › His-Me finger endonuclease fold › 0.55 46.0 3.89e-01 100.0% 70.9%
1b3tA00 3.30.70.390 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Epstein Barr virus nuclear antigen-1, DNA-binding domain 0.54 41.0 2.98e-01 89.4% 57.8%
3v4mB00 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.53 37.0 2.96e-01 76.6% 73.1%
3r5tA02 3.40.50.1980 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nitrogenase molybdenum iron protein domain 0.52 37.0 2.57e-01 80.9% 30.8%
3jc6C00 1.20.58.2050 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.50 37.0 2.63e-01 83.0% 29.6%
2e9xB01 3.40.5.50 Alpha Beta › 3-Layer(aba) Sandwich › Ribosomal Protein L9; domain 1 › 0.50 37.0 3.38e-01 80.9% 68.2%
ECOD (24)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3362574 377.1.1.3 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › TK 0.93 74.0 7.95e-01 87.2% 100.0%
3717094 2004.1.1.28 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › TK 0.93 86.0 5.31e-01 100.0% 21.3%
1868224 377.1.1.3 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › TK 0.92 85.0 7.72e-01 100.0% 77.0%
3674153 2004.1.1.28 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › TK 0.90 83.0 5.16e-01 100.0% 21.4%
1636870 377.1.1.3 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › TK 0.90 79.0 8.02e-01 97.9% 97.8%
4517886 377.1.1.3 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › TK 0.89 79.0 8.07e-01 97.9% 100.0%
3588905 377.1.1.3 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › TK 0.83 71.0 6.94e-01 93.6% 96.0%
4074154 377.1.1.3 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › TK 0.82 66.0 6.78e-01 87.2% 100.0%
4675823 377.1.1.3 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › TK 0.82 75.0 6.69e-01 100.0% 78.5%
4007998 2004.1.1.28 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › TK 0.82 75.0 4.79e-01 100.0% 24.9%
4081305 2004.1.1.28 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › TK 0.82 70.0 4.56e-01 100.0% 23.2%
5058383 377.1.1.3 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › TK 0.82 73.0 7.16e-01 97.9% 98.0%
4355340 377.1.1.0 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like 0.81 73.0 6.93e-01 100.0% 96.4%
4462630 2004.1.1.28 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › TK 0.79 71.0 4.56e-01 100.0% 24.0%
163182 377.1.1.3 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › TK 0.78 69.0 6.79e-01 100.0% 96.1%
5060915 378.1.1.2 ↗ few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH 0.76 67.0 5.74e-01 100.0% 68.0%
5017772 378.1.1.2 ↗ few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH 0.73 65.0 5.07e-01 100.0% 60.0%
4964156 378.1.1.9 ↗ few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH_2 0.73 64.0 4.81e-01 100.0% 85.2%
1144783 378.1.1.2 ↗ few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH 0.69 60.0 4.16e-01 100.0% 30.6%
3642367 377.1.1.0 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like 0.60 50.0 5.11e-01 91.5% 97.8%
3408969 377.9.1.8 ↗ few secondary structure elements › Glucocorticoid receptor-like › HIT/MYND zinc finger-like › HIT/MYND zinc finger-like › zf-FCS 0.59 44.0 3.96e-01 100.0% 57.1%
2831825 3167.1.1.1 ↗ a+b two layers › 40S ribosomal protein rpS21 (S21e) › 40S ribosomal protein rpS21 (S21e) › 40S ribosomal protein rpS21 (S21e) › Ribosomal_S21e 0.54 44.0 3.92e-01 93.6% 75.0%
3798304 376.1.3.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger 0.51 41.0 3.20e-01 100.0% 52.8%
3196317 4.8.1.1 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Chromo 0.50 35.0 2.60e-01 80.9% 27.5%