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Transposase

Euk-Vir

Pandoravirus_neocaledonia

Transposase__YP_009482445__Pandoravirus_neocaledonia__2107708

Identity

Accession:: YP_009482445 ↗
Protein ID:: Transposase
Kingdom:: euk

Quality

80.1 mean pLDDT

Cluster

View cluster (5 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 438-496_508-652

PDB

Domain cluster: rep: Transposase__YP_008320010__Pandoravirus_dulcis__1349409__D24-86_436-646

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF07282.19 best	Cas12f1-like_TNB	74.9	6.00e-21	33.3%	100.0%

D2 medium residues 24-83

PDB

Domain cluster: representative

D3 medium residues 108-132_339-437

PDB

Domain cluster: rep: Transposase__YP_008320010__Pandoravirus_dulcis__1349409__D105-119_337-435

D4 medium residues 133-208_248-276

PDB

Domain cluster: representative

CATH (5)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3h36A00	1.10.10.400	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Polyribonucleotide nucleotidyltransferase, RNA-binding domain	0.66	47.0	5.30e-01	97.1%	98.7%
4ix7A00	1.10.10.2590	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › BEN domain	0.63	50.0	4.88e-01	100.0%	77.2%
3ga8A00	3.10.20.860	Alpha Beta › Roll › Ubiquitin-like (UB roll) ›	0.56	29.0	3.66e-01	92.4%	80.6%
3gw6D02	1.10.10.10	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain	0.53	47.0	4.09e-01	97.1%	85.7%
3pwxA01	1.20.1330.10	Mainly Alpha › Up-down Bundle › f41 fragment of flagellin, N-terminal domain › f41 fragment of flagellin, N-terminal domain	0.51	41.0	3.42e-01	86.7%	78.3%

ECOD (12)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3202292	101.38.1.3 ↗	alpha arrays › HTH › DNA-binding domain of the replication initiator protein ColE2-Rep › DNA-binding domain of the replication initiator protein ColE2-Rep › DUF6891	0.69	45.0	5.31e-01	98.1%	98.6%
4639306	109.4.1.1255 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Adaptin_N, Cnd1	0.56	46.0	2.78e-01	87.6%	31.7%
3815772	109.4.1.1580 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › HAT, HAT_Syf1_CNRKL1_C, HAT_Syf1_CNRKL1_N, HAT_PRP39_N, HAT_PRP39_C	0.55	29.0	1.78e-01	86.7%	7.6%
3614472	109.4.1.0 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat	0.54	40.0	3.36e-01	94.3%	43.3%
4530180	621.1.1.0 ↗	alpha bundles › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain	0.54	48.0	4.44e-01	100.0%	78.5%
4946790	223.1.1.122 ↗	a+b three layers › Profilin-like › sensor domains › sensor domains › HisKA	0.54	45.0	3.93e-01	94.3%	99.4%
5052804	267.1.1.3 ↗	a+b complex topology › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain › Cation_ATPase	0.53	39.0	3.12e-01	78.1%	55.3%
3596927	5050.1.1.0 ↗	alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter	0.51	42.0	3.16e-01	87.6%	87.1%
4426318	3747.1.1.1 ↗	a+b two layers › Flagellar hook protein FlgE D0 domain › Flagellar hook protein FlgE D0 domain › Flagellar hook protein FlgE D0 domain › Flg_bb_rod	0.51	41.0	3.91e-01	86.7%	90.4%
4003239	2006.1.6.1 ↗	a/b three-layered sandwiches › HAD domain-like › HAD domain-related › vWA-like › VWA	0.51	37.0	2.98e-01	77.1%	83.9%
3932496	5001.1.1.44 ↗	alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7TM_GPCR_Srv	0.50	41.0	2.97e-01	87.6%	57.0%
3483425	3745.1.1.0 ↗	alpha bundles › Sodium/Calcium exchanger › Sodium/Calcium exchanger › Sodium/Calcium exchanger	0.50	45.0	2.99e-01	100.0%	70.2%