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Trimeric_virion_coat_protein_-rifampicin_res-
Euk-VirRaccoonpox_virus
Trimeric_virion_coat_protein_-rifampicin_res-__YP_009143426__Raccoonpox_virus__10256
Identity
- Accession:
- YP_009143426 ↗
- Protein ID:
- Trimeric_virion_coat_protein_-rifampicin_res-
- Kingdom:
- euk
Quality
87.2
mean pLDDT
Cluster
View cluster (35 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 269-423
Domain cluster:
rep: rifampicin_resistance_protein__YP_009001666__Anomala_cuprea_entomopoxvirus__62099__D266-416
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF03340.20 best | Pox_Rif | 281.3 | 2.00e-83 | 100.0% | 28.6% |
D2
medium
residues 22-48_61-76_95-108_150-177_209-222
Domain cluster:
representative
Pfam (2)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF03340.20 best | Pox_Rif | 31.6 | 8.70e-08 | 49.5% | 10.0% |
| PF03340.20 | Pox_Rif | 41.2 | 1.10e-10 | 44.4% | 6.8% |
CATH (34)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2vvfA01 | 2.60.120.730 | Mainly Beta › Sandwich › Jelly Rolls › | 0.72 | 59.0 | 5.24e-01 | 87.9% | 99.3% |
| 5tipA02 | 2.70.9.20 | Mainly Beta › Distorted Sandwich › Adenovirus Type 2 Hexon; domain 4 › Major capsid protein Vp54 | 0.65 | 55.0 | 4.31e-01 | 93.9% | 99.1% |
| 5z06A01 | 2.60.120.430 | Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding lectin | 0.64 | 47.0 | 3.98e-01 | 78.8% | 100.0% |
| 4h3wA02 | 2.60.120.1260 | Mainly Beta › Sandwich › Jelly Rolls › | 0.63 | 52.0 | 4.51e-01 | 89.9% | 94.1% |
| 1f15B00 | 2.60.120.530 | Mainly Beta › Sandwich › Jelly Rolls › Cucumovirus coat protein, subunit A | 0.62 | 50.0 | 4.06e-01 | 86.9% | 76.3% |
| 1o59A01 | 2.60.120.260 | Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like | 0.62 | 50.0 | 4.20e-01 | 88.9% | 89.8% |
| 4uzgA01 | 2.60.40.740 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.60 | 44.0 | 3.83e-01 | 77.8% | 92.3% |
| 2id4A02 | 2.60.120.260 | Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like | 0.59 | 48.0 | 4.32e-01 | 89.9% | 97.8% |
| 5j98B00 | 2.60.120.20 | Mainly Beta › Sandwich › Jelly Rolls › | 0.58 | 51.0 | 3.79e-01 | 99.0% | 78.8% |
| 5jzgA00 | 2.60.120.20 | Mainly Beta › Sandwich › Jelly Rolls › | 0.58 | 47.0 | 3.68e-01 | 90.9% | 72.6% |
| 3vbhC00 | 2.60.120.20 | Mainly Beta › Sandwich › Jelly Rolls › | 0.57 | 47.0 | 3.62e-01 | 92.9% | 76.4% |
| 4qpiC00 | 2.60.120.20 | Mainly Beta › Sandwich › Jelly Rolls › | 0.57 | 48.0 | 3.64e-01 | 93.9% | 89.0% |
| 4ca9A00 | 2.60.120.340 | Mainly Beta › Sandwich › Jelly Rolls › Nucleoplasmin core domain | 0.56 | 49.0 | 4.92e-01 | 94.9% | 96.9% |
| 6mkbA00 | 2.60.120.40 | Mainly Beta › Sandwich › Jelly Rolls › | 0.56 | 46.0 | 3.97e-01 | 90.9% | 98.8% |
| 1b35C00 | 2.60.120.20 | Mainly Beta › Sandwich › Jelly Rolls › | 0.56 | 48.0 | 3.50e-01 | 96.0% | 80.9% |
| 1ihmB01 | 2.60.120.20 | Mainly Beta › Sandwich › Jelly Rolls › | 0.55 | 49.0 | 3.82e-01 | 100.0% | 80.5% |
| 4qpiB00 | 2.60.120.20 | Mainly Beta › Sandwich › Jelly Rolls › | 0.55 | 46.0 | 3.68e-01 | 96.0% | 91.2% |
| 4p02B03 | 2.60.120.260 | Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like | 0.53 | 44.0 | 3.94e-01 | 91.9% | 96.5% |
| 8bvoA01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.53 | 30.0 | 3.15e-01 | 71.7% | 60.5% |
| 1cov100 | 2.60.120.20 | Mainly Beta › Sandwich › Jelly Rolls › | 0.53 | 45.0 | 3.40e-01 | 97.0% | 67.3% |
| 1df0A03 | 2.60.120.380 | Mainly Beta › Sandwich › Jelly Rolls › | 0.53 | 43.0 | 3.92e-01 | 88.9% | 100.0% |
| 5aooC00 | 2.60.120.20 | Mainly Beta › Sandwich › Jelly Rolls › | 0.53 | 44.0 | 3.50e-01 | 94.9% | 77.7% |
| 3w5nA03 | 2.60.120.260 | Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like | 0.53 | 41.0 | 3.47e-01 | 91.9% | 49.7% |
| 3j26N01 | 2.60.120.1100 | Mainly Beta › Sandwich › Jelly Rolls › | 0.52 | 42.0 | 3.61e-01 | 91.9% | 98.8% |
| 3s2cJ01 | 2.60.40.1180 | Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II | 0.52 | 40.0 | 3.57e-01 | 85.9% | 58.6% |
| 4fcaA01 | 2.60.120.1250 | Mainly Beta › Sandwich › Jelly Rolls › Peptidase M60, enhancin-like domain 1 | 0.52 | 39.0 | 3.87e-01 | 82.8% | 98.2% |
| 3c3vA01 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.51 | 45.0 | 3.49e-01 | 100.0% | 62.0% |
| 3gqcC04 | 3.30.1490.100 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain | 0.51 | 42.0 | 4.00e-01 | 88.9% | 100.0% |
| 2q30A01 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.51 | 39.0 | 4.06e-01 | 92.9% | 92.0% |
| 4ag4A02 | 2.60.120.1190 | Mainly Beta › Sandwich › Jelly Rolls › | 0.51 | 41.0 | 3.45e-01 | 90.9% | 100.0% |
| 1uijB01 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.51 | 41.0 | 3.49e-01 | 90.9% | 53.3% |
| 4o9gA00 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.50 | 41.0 | 3.71e-01 | 88.9% | 65.2% |
| 4nplA00 | 2.60.120.590 | Mainly Beta › Sandwich › Jelly Rolls › Alpha-ketoglutarate-dependent dioxygenase AlkB-like | 0.50 | 41.0 | 3.25e-01 | 88.9% | 48.8% |
| 3uxfA02 | 2.60.40.740 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.50 | 42.0 | 3.53e-01 | 89.9% | 68.1% |
ECOD (34)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4883559 | 10.2.1.33 ↗ | beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Pox_Rif | 0.94 | 70.0 | 5.27e-01 | 76.8% | 83.8% |
| 2389747 | 10.2.1.33 ↗ | beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Pox_Rif | 0.92 | 86.0 | 6.35e-01 | 97.0% | 88.5% |
| 3420779 | 10.32.1.203 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › Seipin | 0.63 | 51.0 | 4.42e-01 | 88.9% | 99.4% |
| 4002865 | 10.32.1.6 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › P_proprotein | 0.61 | 50.0 | 4.49e-01 | 88.9% | 100.0% |
| 4941983 | 10.1.2.0 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) | 0.60 | 48.0 | 4.35e-01 | 87.9% | 100.0% |
| 3539303 | 10.2.1.0 ↗ | beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) | 0.59 | 50.0 | 4.06e-01 | 96.0% | 72.5% |
| 3940888 | 10.32.1.6 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › P_proprotein | 0.59 | 48.0 | 4.41e-01 | 89.9% | 100.0% |
| 4937729 | 10.1.2.0 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) | 0.59 | 46.0 | 4.37e-01 | 84.8% | 97.5% |
| 4935032 | 10.1.2.0 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) | 0.57 | 47.0 | 4.61e-01 | 92.9% | 99.1% |
| 3247634 | 11.10.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › TRAF domain-like › TRAF domain-like | 0.57 | 49.0 | 4.47e-01 | 96.0% | 98.5% |
| 3628707 | 10.2.1.0 ↗ | beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) | 0.57 | 45.0 | 3.49e-01 | 85.9% | 88.6% |
| 3901599 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.56 | 33.0 | 3.28e-01 | 82.8% | 54.3% |
| 3897855 | 10.3.1.1 ↗ | beta sandwiches › jelly-roll › TNF-like › TNF-like › TNF | 0.56 | 46.0 | 3.96e-01 | 94.9% | 97.1% |
| 3919493 | 10.32.1.234 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › PGAP1_3rd | 0.55 | 46.0 | 4.06e-01 | 90.9% | 90.3% |
| 3221414 | 11.10.1.6 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › TRAF domain-like › TRAF domain-like › MATH | 0.55 | 49.0 | 3.32e-01 | 98.0% | 38.9% |
| 3509243 | 11.1.1.9 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Arrestin_N | 0.55 | 41.0 | 3.49e-01 | 80.8% | 74.1% |
| 5055778 | 10.1.2.0 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) | 0.55 | 41.0 | 4.09e-01 | 90.9% | 75.2% |
| 3551050 | 10.32.1.41 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › GOLD_2 | 0.54 | 43.0 | 3.94e-01 | 85.9% | 88.5% |
| 3220055 | 11.1.1.1023 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › MATH | 0.54 | 45.0 | 4.14e-01 | 90.9% | 99.2% |
| 3848806 | 10.32.1.0 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like | 0.53 | 42.0 | 3.90e-01 | 83.8% | 92.7% |
| 4030574 | 929.1.1.0 ↗ | beta duplicates or obligate multimers › Resistin › Resistin › Resistin | 0.53 | 41.0 | 4.38e-01 | 100.0% | 98.8% |
| 3701750 | 521.1.1.1 ↗ | beta sandwiches › Ecotin, trypsin inhibitor › Ecotin, trypsin inhibitor › Ecotin, trypsin inhibitor › Ecotin | 0.53 | 38.0 | 3.45e-01 | 75.8% | 87.4% |
| 3808421 | 10.12.1.16 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › 2OG-FeII_Oxy | 0.52 | 46.0 | 4.07e-01 | 99.0% | 71.7% |
| 2491327 | 929.1.1.0 ↗ | beta duplicates or obligate multimers › Resistin › Resistin › Resistin | 0.52 | 42.0 | 4.40e-01 | 98.0% | 100.0% |
| 3677238 | 10.32.1.0 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like | 0.51 | 37.0 | 3.46e-01 | 77.8% | 83.1% |
| 3223716 | 11.10.1.6 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › TRAF domain-like › TRAF domain-like › MATH | 0.51 | 38.0 | 3.53e-01 | 79.8% | 80.8% |
| 3221683 | 11.10.1.6 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › TRAF domain-like › TRAF domain-like › MATH | 0.51 | 41.0 | 3.76e-01 | 86.9% | 98.5% |
| 3206484 | 11.1.5.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f | 0.51 | 40.0 | 3.72e-01 | 85.9% | 83.8% |
| 3265251 | 5095.1.1.0 ↗ | beta sandwiches › N-terminal beta-sandwich domain in anthrax protective antigen › N-terminal beta-sandwich domain in anthrax protective antigen › N-terminal beta-sandwich domain in anthrax protective antigen | 0.51 | 41.0 | 3.96e-01 | 94.9% | 77.3% |
| 4978088 | 10.1.2.0 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) | 0.51 | 40.0 | 3.86e-01 | 87.9% | 93.0% |
| 5083661 | 10.1.2.0 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) | 0.50 | 41.0 | 4.06e-01 | 89.9% | 100.0% |
| 3492248 | 10.32.1.0 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like | 0.50 | 41.0 | 4.17e-01 | 90.9% | 100.0% |
| 4027385 | 929.1.1.0 ↗ | beta duplicates or obligate multimers › Resistin › Resistin › Resistin | 0.50 | 40.0 | 4.20e-01 | 100.0% | 96.7% |
| 3599275 | 521.1.1.0 ↗ | beta sandwiches › Ecotin, trypsin inhibitor › Ecotin, trypsin inhibitor › Ecotin, trypsin inhibitor | 0.50 | 37.0 | 3.51e-01 | 79.8% | 97.6% |
D3
medium
residues 49-60_77-94_109-149_178-208
Domain cluster:
rep: trimeric_virion_coat_protein_rifampicin_res__YP_008004543__Choristoneura_rosaceana_entomopoxvirus_L__1293539__D69-90_113-150_189-212
Pfam (2)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF03340.20 best | Pox_Rif | 59.8 | 2.50e-16 | 68.6% | 13.5% |
| PF03340.20 | Pox_Rif | 33.5 | 2.30e-08 | 32.4% | 5.9% |
ECOD (5)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2389747 | 10.2.1.33 ↗ | beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Pox_Rif | 0.99 | 97.0 | 7.18e-01 | 100.0% | 73.4% |
| 4883559 | 10.2.1.33 ↗ | beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Pox_Rif | 0.97 | 94.0 | 7.08e-01 | 100.0% | 76.2% |
| 4019005 | 10.12.1.30 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › 3-HAO | 0.52 | 31.0 | 3.21e-01 | 95.1% | 62.1% |
| 3990676 | 3223.1.1.1 ↗ | beta sandwiches › Amiloride-sensitive cation channel 2 › Amiloride-sensitive cation channel 2 › Amiloride-sensitive cation channel 2 › ASC | 0.52 | 39.0 | 2.61e-01 | 83.3% | 71.8% |
| 5040939 | 10.1.2.0 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) | 0.50 | 37.0 | 3.88e-01 | 99.0% | 88.9% |
D4
medium
residues 223-266_428-551
Domain cluster:
rep: putative_capsid_protein_4__YP_003969808__Cafeteria_roenbergensis_virus_BV-PW1__693272__D326-494
Pfam (2)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF03340.20 best | Pox_Rif | 194.1 | 5.10e-57 | 72.6% | 22.1% |
| PF03340.20 | Pox_Rif | 52.1 | 5.50e-14 | 26.2% | 7.9% |