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Trypsin-like_peptidase_domain

Euk-Vir

Pandoravirus_salinus

Trypsin-like_peptidase_domain__YP_008436915__Pandoravirus_salinus__1349410

Identity

Accession:
YP_008436915 ↗
Protein ID:
Trypsin-like_peptidase_domain
Kingdom:
euk

Quality

64.8 mean pLDDT

Cluster

View cluster (5 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 555-689
PDB
Domain cluster: rep: Serine_protease,_DegP_HtrA,_do-like__YP_009352826__Kaumoebavirus_Viruses.__X__D302-418
Pfam (3)
AccessionNameScoreE-valueQ covHMM cov
PF14685.15 best PDZ_Tricorn 27.3 4.40e-06 68.2% 56.8%
PF00595.30 PDZ 23.7 7.20e-05 56.3% 56.8%
PF17820.8 PDZ_6 33.7 3.20e-08 39.3% 70.4%
D2 medium residues 20-133_217-250
PDB
Domain cluster: rep: LC208019__BBC20930.1__X__00004__D36-118
D3 medium residues 134-216
PDB
Domain cluster: rep: ORF1a__YP_009047079__Human_astrovirus_BF34__1518575__D522-618
Pfam (2)
AccessionNameScoreE-valueQ covHMM cov
PF00089.33 best Trypsin 26.9 5.70e-06 100.0% 24.6%
PF13365.13 Trypsin_2 35.0 3.20e-08 78.3% 49.0%
D4 medium residues 251-272_407-539
PDB
Domain cluster: representative
CATH (22)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4fgmA03 2.30.42.10 Mainly Beta › Roll › Pdz3 Domain › PDZ domain 0.82 46.0 5.58e-01 99.4% 82.5%
4c2dA01 2.30.42.10 Mainly Beta › Roll › Pdz3 Domain › PDZ domain 0.80 46.0 5.84e-01 98.7% 94.6%
3rleA01 2.30.42.10 Mainly Beta › Roll › Pdz3 Domain › PDZ domain 0.76 43.0 5.20e-01 87.1% 83.7%
1te0A03 2.30.42.10 Mainly Beta › Roll › Pdz3 Domain › PDZ domain 0.75 47.0 5.86e-01 99.4% 99.0%
2kjkA00 2.30.42.10 Mainly Beta › Roll › Pdz3 Domain › PDZ domain 0.73 39.0 4.88e-01 85.8% 82.0%
2l97A01 2.30.42.10 Mainly Beta › Roll › Pdz3 Domain › PDZ domain 0.72 45.0 5.53e-01 96.8% 99.0%
1iz6A01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.69 28.0 4.11e-01 98.1% 84.1%
3oyyA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.68 28.0 4.15e-01 96.8% 87.9%
3a5zB01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.67 27.0 4.21e-01 96.8% 92.1%
1uebA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.67 27.0 4.17e-01 96.8% 92.1%
3cpfA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.67 26.0 3.88e-01 98.1% 83.1%
6s8zA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.67 27.0 4.18e-01 96.8% 93.5%
2awnC03 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.67 21.0 3.43e-01 93.5% 74.1%
3kxtA00 2.30.30.610 Mainly Beta › Roll › SH3 type barrels. › Chromatin protein Cren7 0.60 23.0 3.68e-01 92.3% 94.6%
2xotA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.60 30.0 3.87e-01 97.4% 84.9%
5k6uA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.58 29.0 3.69e-01 96.8% 81.1%
2ia7A00 3.10.450.40 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.57 27.0 3.21e-01 97.4% 63.1%
1hczA02 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.56 23.0 3.66e-01 72.9% 100.0%
3rrkA01 3.30.70.2170 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.53 22.0 3.01e-01 87.7% 76.4%
4es8B02 2.60.40.3580 Mainly Beta › Sandwich › Immunoglobulin-like › 0.52 31.0 3.72e-01 99.4% 90.1%
1ej6A05 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 30.0 3.71e-01 96.8% 92.6%
2zg2A02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 27.0 3.45e-01 97.4% 87.6%
ECOD (34)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3313368 7.1.1.5 ↗ beta barrels › PDZ domain › PDZ domain › PDZ domain › PDZ_2 0.84 59.0 6.95e-01 100.0% 100.0%
3660869 7.1.1.0 ↗ beta barrels › PDZ domain › PDZ domain › PDZ domain 0.83 51.0 6.50e-01 90.3% 100.0%
3808103 7.1.1.0 ↗ beta barrels › PDZ domain › PDZ domain › PDZ domain 0.83 58.0 6.73e-01 100.0% 96.5%
3386905 7.1.1.5 ↗ beta barrels › PDZ domain › PDZ domain › PDZ domain › PDZ_2 0.81 52.0 6.21e-01 100.0% 94.3%
5065268 7.1.1.5 ↗ beta barrels › PDZ domain › PDZ domain › PDZ domain › PDZ_2 0.81 51.0 6.37e-01 99.4% 99.0%
1945520 7.1.1.4 ↗ beta barrels › PDZ domain › PDZ domain › PDZ domain › GRASP55_65 0.80 40.0 5.61e-01 82.6% 95.0%
3249308 7.1.1.5 ↗ beta barrels › PDZ domain › PDZ domain › PDZ domain › PDZ_2 0.80 55.0 6.51e-01 97.4% 98.2%
3808326 7.1.1.5 ↗ beta barrels › PDZ domain › PDZ domain › PDZ domain › PDZ_2 0.80 53.0 6.18e-01 100.0% 91.3%
4577010 7.1.1.1 ↗ beta barrels › PDZ domain › PDZ domain › PDZ domain › PDZ 0.80 47.0 6.00e-01 100.0% 96.8%
3839472 7.1.1.5 ↗ beta barrels › PDZ domain › PDZ domain › PDZ domain › PDZ_2 0.79 50.0 6.06e-01 99.4% 94.3%
4030031 7.1.1.0 ↗ beta barrels › PDZ domain › PDZ domain › PDZ domain 0.79 55.0 6.57e-01 98.7% 100.0%
3967009 7.1.1.5 ↗ beta barrels › PDZ domain › PDZ domain › PDZ domain › PDZ_2 0.79 52.0 6.16e-01 100.0% 94.5%
4344951 7.1.1.10 ↗ beta barrels › PDZ domain › PDZ domain › PDZ domain › PDZ_6 0.77 46.0 5.75e-01 100.0% 95.8%
3326442 7.1.1.10 ↗ beta barrels › PDZ domain › PDZ domain › PDZ domain › PDZ_6 0.75 45.0 5.67e-01 97.4% 97.9%
3468612 7.1.1.0 ↗ beta barrels › PDZ domain › PDZ domain › PDZ domain 0.73 48.0 5.75e-01 99.4% 98.1%
3950208 4.1.1.57 ↗ beta barrels › SH3 › SH3 › SH3 › EFP_N 0.67 27.0 4.11e-01 96.8% 89.2%
4135259 4.1.1.57 ↗ beta barrels › SH3 › SH3 › SH3 › EFP_N 0.66 27.0 4.11e-01 96.8% 90.8%
3924126 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.63 32.0 3.99e-01 97.4% 81.1%
3902618 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.57 28.0 3.31e-01 98.1% 64.8%
2475219 7.1.1.0 ↗ beta barrels › PDZ domain › PDZ domain › PDZ domain 0.57 32.0 4.13e-01 83.2% 94.6%
3778104 11.1.1.178 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig_2 0.56 27.0 3.24e-01 97.4% 67.0%
3737835 241.15.1.0 ↗ a+b two layers › Type III secretory system chaperone-like › FP (Fbxo7/PI31) dimerization domain › FP (Fbxo7/PI31) dimerization domain 0.56 32.0 3.92e-01 100.0% 87.0%
3545415 11.1.1.179 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig_3 0.54 28.0 3.30e-01 97.4% 70.5%
3906327 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.54 28.0 3.18e-01 97.4% 64.2%
3579398 11.1.1.2 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › fn3 0.54 30.0 3.69e-01 97.4% 87.4%
3700524 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.54 28.0 3.52e-01 98.1% 82.1%
3251195 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.53 27.0 3.49e-01 97.4% 85.9%
5032784 11.1.4.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like 0.53 32.0 3.94e-01 100.0% 95.8%
4981433 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.53 31.0 3.72e-01 100.0% 88.0%
3480111 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.51 26.0 3.36e-01 96.8% 87.1%
3256586 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.51 26.0 3.35e-01 97.4% 87.1%
3730028 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.50 28.0 3.54e-01 96.1% 92.2%
3895300 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.50 29.0 3.41e-01 97.4% 81.9%
3248012 11.1.1.29 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › TIG 0.50 28.0 3.43e-01 96.8% 87.4%