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Tyrosine-tRNA_ligase

Euk-Vir

Pandoravirus_salinus

Tyrosine-tRNA_ligase__YP_008438242__Pandoravirus_salinus__1349410

Identity

Accession:
YP_008438242 ↗
Protein ID:
Tyrosine-tRNA_ligase
Kingdom:
euk

Quality

91.6 mean pLDDT

Cluster

View cluster (10 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 35-271
PDB
Domain cluster: rep: Mad1_20_16_scaffold_0_curated_closed_complete_start-adj_prodigal-single.1__X__X__00391__D1-117_229-334
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF00579.32 best tRNA-synt_1b 24.4 2.40e-05 77.6% 59.6%
CATH (46)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1r6uA01 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.98 97.0 9.35e-01 100.0% 93.0%
3hzrA01 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.96 93.0 8.94e-01 100.0% 89.0%
3focA01 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.94 91.0 8.38e-01 100.0% 93.5%
3a04A01 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.89 86.0 8.41e-01 100.0% 93.2%
1j1uA01 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.85 68.0 7.48e-01 92.0% 98.5%
1qrsA05 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.84 44.0 6.11e-01 75.5% 99.2%
2yy5A01 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.83 61.0 6.47e-01 75.9% 82.3%
2j5bB01 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.83 66.0 7.29e-01 91.1% 98.5%
3u1vA01 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.83 61.0 6.40e-01 75.5% 81.9%
1yi8B01 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.82 62.0 6.51e-01 88.6% 83.8%
3do8A00 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.82 43.0 5.66e-01 75.5% 88.9%
2cycA01 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.82 72.0 7.38e-01 90.3% 98.7%
2el7B01 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.82 61.0 6.35e-01 79.7% 81.2%
1n3lA01 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.81 69.0 7.35e-01 90.3% 99.5%
3p0hB01 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.81 53.0 4.85e-01 90.3% 51.6%
1h3fA01 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.80 63.0 6.96e-01 91.6% 99.0%
3p0hB02 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.79 57.0 5.28e-01 78.5% 58.8%
6ncrB01 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.79 61.0 6.21e-01 78.5% 80.7%
1jilA01 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.78 69.0 7.15e-01 91.1% 99.1%
2pidA01 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.76 67.0 6.88e-01 91.6% 99.1%
6hcdD00 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.76 41.0 5.47e-01 75.9% 93.3%
4wnyA00 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.76 42.0 5.67e-01 78.1% 98.5%
2jaxA01 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.74 39.0 5.44e-01 75.5% 99.2%
3oqvA00 3.40.50.11710 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Cyclodipeptide synthase 0.72 55.0 5.85e-01 78.1% 96.2%
2xryA01 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.72 45.0 5.57e-01 90.7% 98.6%
3oqiA00 3.40.50.11710 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Cyclodipeptide synthase 0.72 59.0 6.15e-01 85.7% 99.5%
1pswA02 3.40.50.2000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glycogen Phosphorylase B; 0.70 34.0 3.89e-01 76.4% 61.4%
2x0kA01 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.70 41.0 4.63e-01 75.9% 74.2%
3sp1A01 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.70 60.0 5.77e-01 89.9% 85.4%
3fg9C01 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.69 41.0 5.33e-01 75.1% 99.3%
4h3sA01 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.67 57.0 4.90e-01 88.2% 76.2%
2r60A02 3.40.50.2000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glycogen Phosphorylase B; 0.66 37.0 3.88e-01 76.4% 59.5%
5enzA02 3.40.50.2000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glycogen Phosphorylase B; 0.66 35.0 4.23e-01 76.4% 76.4%
3ot4A00 3.40.50.850 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Isochorismatase-like 0.61 42.0 4.62e-01 98.3% 83.3%
7jt8I02 3.90.190.20 Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Mur ligase, C-terminal domain 0.61 37.0 4.66e-01 91.6% 99.3%
5hvmA02 3.40.50.2000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glycogen Phosphorylase B; 0.57 36.0 3.89e-01 76.8% 71.2%
3ih5A00 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.57 40.0 4.29e-01 75.9% 82.0%
5jioA02 3.40.50.2000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glycogen Phosphorylase B; 0.56 36.0 3.83e-01 76.8% 70.8%
3nb0D01 3.40.50.2000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glycogen Phosphorylase B; 0.55 42.0 3.90e-01 78.9% 85.7%
4x7rA03 3.40.50.2000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glycogen Phosphorylase B; 0.55 32.0 3.68e-01 76.4% 76.3%
3mt0A00 3.40.50.12370 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.55 50.0 4.68e-01 94.1% 91.1%
3a1fA00 3.40.50.80 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nucleotide-binding domain of ferredoxin-NADP reductase (FNR) module 0.55 37.0 4.38e-01 94.1% 98.8%
4qdiA03 3.90.190.20 Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Mur ligase, C-terminal domain 0.55 34.0 4.20e-01 93.2% 100.0%
3t5tA02 3.40.50.2000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glycogen Phosphorylase B; 0.55 34.0 3.72e-01 75.9% 75.0%
1gg4A01 3.90.190.20 Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Mur ligase, C-terminal domain 0.55 33.0 4.09e-01 94.9% 100.0%
1o98A01 3.40.1450.10 Alpha Beta › 3-Layer(aba) Sandwich › 2,3-Bisphosphoglycerate-independent phosphoglycerate mutase, substrate-binding domain › BPG-independent phosphoglycerate mutase, domain B 0.51 46.0 4.68e-01 100.0% 98.3%
ECOD (80)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3933178 2005.1.1.2 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1b 0.99 97.0 7.97e-01 100.0% 62.6%
3797510 2005.1.1.0 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains 0.98 97.0 7.86e-01 100.0% 61.0%
4015705 2005.1.1.0 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains 0.98 97.0 7.74e-01 100.0% 61.2%
4948751 2005.1.1.2 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1b 0.98 91.0 7.82e-01 99.2% 66.8%
1260984 2005.1.1.2 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1b 0.98 96.0 7.66e-01 100.0% 58.3%
3701871 2005.1.1.2 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1b 0.97 96.0 7.57e-01 100.0% 63.1%
3719341 2005.1.1.0 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains 0.97 71.0 7.38e-01 74.7% 89.8%
135810 2005.1.1.2 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1b 0.96 93.0 7.71e-01 100.0% 62.6%
5077374 2005.1.1.2 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1b 0.95 88.0 7.28e-01 100.0% 59.7%
5023951 2005.1.1.2 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1b 0.95 89.0 7.40e-01 100.0% 61.6%
3703665 2005.1.1.2 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1b 0.94 82.0 8.20e-01 88.6% 97.9%
5054061 2005.1.1.2 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1b 0.94 87.0 7.40e-01 100.0% 64.6%
4955082 2005.1.1.2 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1b 0.94 87.0 7.61e-01 100.0% 68.8%
4961918 2005.1.1.2 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1b 0.93 87.0 7.07e-01 100.0% 57.8%
5053430 2005.1.1.2 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1b 0.91 84.0 7.12e-01 100.0% 63.4%
5027513 2005.1.1.2 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1b 0.90 84.0 7.76e-01 100.0% 79.3%
5067873 2005.1.1.2 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1b 0.89 87.0 7.19e-01 100.0% 65.1%
5058738 2005.1.1.2 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1b 0.89 83.0 7.06e-01 100.0% 65.1%
5003581 2005.1.1.2 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1b 0.88 86.0 6.94e-01 100.0% 70.1%
5027854 2005.1.1.2 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1b 0.87 83.0 6.94e-01 100.0% 63.3%
4133327 2005.1.1.2 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1b 0.87 85.0 7.01e-01 100.0% 65.5%
4979586 2005.1.1.2 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1b 0.86 75.0 6.30e-01 94.5% 58.4%
2126485 2005.1.1.2 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1b 0.85 61.0 5.44e-01 75.5% 54.2%
3890206 2005.1.1.0 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains 0.85 68.0 6.18e-01 81.9% 79.7%
3997952 2005.1.1.2 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1b 0.85 68.0 6.02e-01 91.6% 60.3%
5012077 2005.1.1.2 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1b 0.84 72.0 6.07e-01 90.3% 57.8%
4013546 2005.1.1.0 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains 0.83 71.0 6.11e-01 91.1% 60.9%
4061943 2005.1.1.2 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1b 0.82 70.0 6.10e-01 90.3% 61.2%
4469624 2005.1.1.2 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1b 0.82 62.0 5.32e-01 76.8% 52.9%
4064994 2005.1.1.2 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1b 0.82 70.0 6.16e-01 90.3% 63.2%
4001700 2005.1.1.2 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1b 0.82 63.0 5.23e-01 78.5% 49.1%
4967192 2005.1.1.2 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1b 0.82 71.0 6.28e-01 92.0% 64.9%
5055197 2005.1.1.13 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › CTP_transf_like 0.82 49.0 6.10e-01 96.2% 92.7%
4023690 2005.1.1.2 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1b 0.82 71.0 5.99e-01 91.1% 57.9%
3418746 2005.1.1.2 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1b 0.81 49.0 6.31e-01 81.4% 98.6%
4264395 2005.1.1.2 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1b 0.81 62.0 5.35e-01 77.6% 55.7%
4664989 2005.1.1.0 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains 0.81 61.0 5.30e-01 76.8% 54.1%
5001337 2005.1.1.2 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1b 0.80 69.0 5.82e-01 90.3% 56.8%
3465691 2005.1.1.2 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1b 0.80 68.0 5.90e-01 91.1% 61.2%
3614377 2005.1.1.0 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains 0.80 57.0 5.01e-01 76.4% 51.3%
1174411 2005.1.1.0 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains 0.79 55.0 6.39e-01 73.8% 94.9%
4241086 2005.1.1.2 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1b 0.79 69.0 5.98e-01 90.3% 62.6%
4408360 2005.1.1.2 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1b 0.79 69.0 6.12e-01 92.0% 66.9%
3970530 2005.1.1.2 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1b 0.79 69.0 6.07e-01 90.7% 67.3%
2140850 2005.1.1.2 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1b 0.79 67.0 7.05e-01 91.6% 98.1%
3497647 2005.1.1.0 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains 0.78 69.0 5.49e-01 90.7% 53.5%
4275453 2005.1.1.2 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1b 0.78 69.0 6.07e-01 91.1% 70.2%
3452376 2005.1.1.0 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains 0.78 47.0 6.00e-01 93.7% 98.6%
4600892 2005.1.1.0 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains 0.77 68.0 5.98e-01 94.1% 65.7%
3938266 2005.1.1.2 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1b 0.76 68.0 5.86e-01 92.4% 66.4%
2391911 2005.1.1.3 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › Usp 0.76 41.0 5.47e-01 75.9% 93.3%
4510838 7512.1.1.81 ↗ a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Glyco_trans_A_1 0.76 44.0 4.54e-01 92.8% 58.7%
3724289 2005.1.1.2 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1b 0.74 66.0 5.52e-01 93.2% 59.4%
3472617 2005.1.1.13 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › CTP_transf_like 0.72 47.0 5.18e-01 94.1% 79.5%
4302118 7512.1.1.0 ↗ a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase 0.71 40.0 4.50e-01 96.2% 69.2%
3506992 2003.1.10.27 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › PreATP-grasp domain › CPSase_L_D1 0.71 33.0 4.91e-01 74.7% 99.0%
4947270 2003.1.10.35 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › PreATP-grasp domain › CPSase_L_D2 0.71 35.0 4.89e-01 77.6% 94.2%
3603346 2005.1.1.3 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › Usp 0.70 46.0 5.56e-01 91.6% 96.9%
3583171 2005.1.1.0 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains 0.70 46.0 5.43e-01 78.5% 93.9%
5045040 7512.1.1.3 ↗ a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Glycos_transf_1 0.69 35.0 3.89e-01 76.4% 60.0%
4974802 7512.1.1.3 ↗ a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Glycos_transf_1 0.68 35.0 4.03e-01 78.5% 65.1%
4987638 2003.1.10.0 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › PreATP-grasp domain 0.67 34.0 4.12e-01 76.8% 72.3%
4979182 2005.1.1.0 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains 0.66 63.0 5.19e-01 100.0% 98.0%
3599195 2005.1.1.0 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains 0.65 55.0 5.53e-01 87.3% 99.2%
4996411 7512.1.1.3 ↗ a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Glycos_transf_1 0.63 32.0 3.46e-01 75.9% 55.0%
3499812 2003.1.10.0 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › PreATP-grasp domain 0.63 38.0 4.82e-01 93.7% 100.0%
1262726 7512.1.1.3 ↗ a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Glycos_transf_1 0.61 34.0 3.68e-01 75.9% 61.2%
3456832 2004.1.1.73 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › MMR_HSR1 0.58 46.0 4.96e-01 98.7% 96.1%
4383054 7512.1.1.6 ↗ a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Glyco_transf_20 0.58 37.0 3.79e-01 76.4% 65.8%
372271 2005.1.1.10 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › ETF 0.57 40.0 4.23e-01 75.9% 78.5%
4143986 2005.1.1.38 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › CTU2 0.56 49.0 4.28e-01 99.6% 63.2%
3229775 7512.1.1.3 ↗ a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Glycos_transf_1 0.56 36.0 3.95e-01 79.7% 78.4%
1931135 7512.1.1.6 ↗ a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Glyco_transf_20 0.56 35.0 3.60e-01 76.4% 64.0%
3651717 7512.1.1.6 ↗ a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Glyco_transf_20 0.55 37.0 3.53e-01 76.4% 57.1%
3972392 7512.1.1.15 ↗ a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Glyphos_transf 0.55 35.0 3.87e-01 80.2% 76.4%
4332296 7570.1.1.6 ↗ a/b three-layered sandwiches › MurD-like peptide ligases, peptide-binding domain › MurD-like peptide ligases, peptide-binding domain › MurD-like peptide ligases, peptide-binding domain › PF27274 0.55 31.0 4.03e-01 90.3% 100.0%
4276737 7531.1.1.0 ↗ a/b three-layered sandwiches › Carbamate kinase-like › Carbamate kinase-like › Carbamate kinase-like 0.54 46.0 4.21e-01 90.3% 84.4%
4498778 7554.1.1.1 ↗ a/b three-layered sandwiches › 2,3-Bisphosphoglycerate-independent phosphoglycerate mutase, substrate-binding domain › 2,3-Bisphosphoglycerate-independent phosphoglycerate mutase, substrate-binding domain › 2,3-Bisphosphoglycerate-independent phosphoglycerate mutase, substrate-binding domain › iPGM_N 0.54 47.0 4.78e-01 100.0% 94.8%
5002765 2004.1.1.1 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA 0.52 34.0 3.86e-01 88.2% 86.1%
5057806 7512.1.1.3 ↗ a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Glycos_transf_1 0.51 31.0 3.49e-01 75.9% 75.7%
D2 high residues 299-384
PDB
Domain cluster: representative
CATH (17)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3tzeA02 1.10.240.10 Mainly Alpha › Orthogonal Bundle › Tyrosyl-Transfer RNA Synthetase › Tyrosyl-Transfer RNA Synthetase 0.99 88.0 7.99e-01 100.0% 73.1%
3hv0A02 1.10.240.10 Mainly Alpha › Orthogonal Bundle › Tyrosyl-Transfer RNA Synthetase › Tyrosyl-Transfer RNA Synthetase 0.98 92.0 8.20e-01 100.0% 74.1%
3hzrA02 1.10.240.10 Mainly Alpha › Orthogonal Bundle › Tyrosyl-Transfer RNA Synthetase › Tyrosyl-Transfer RNA Synthetase 0.96 92.0 8.31e-01 100.0% 77.5%
3a04A02 1.10.240.10 Mainly Alpha › Orthogonal Bundle › Tyrosyl-Transfer RNA Synthetase › Tyrosyl-Transfer RNA Synthetase 0.93 89.0 7.86e-01 100.0% 74.1%
2g36A02 1.10.240.10 Mainly Alpha › Orthogonal Bundle › Tyrosyl-Transfer RNA Synthetase › Tyrosyl-Transfer RNA Synthetase 0.87 79.0 7.25e-01 100.0% 77.6%
6ncrA02 1.10.240.10 Mainly Alpha › Orthogonal Bundle › Tyrosyl-Transfer RNA Synthetase › Tyrosyl-Transfer RNA Synthetase 0.86 78.0 7.13e-01 100.0% 76.9%
3tzlA02 1.10.240.10 Mainly Alpha › Orthogonal Bundle › Tyrosyl-Transfer RNA Synthetase › Tyrosyl-Transfer RNA Synthetase 0.85 74.0 6.94e-01 100.0% 76.9%
5tevB02 1.10.240.10 Mainly Alpha › Orthogonal Bundle › Tyrosyl-Transfer RNA Synthetase › Tyrosyl-Transfer RNA Synthetase 0.85 74.0 6.89e-01 100.0% 76.7%
2cyaA02 1.10.240.10 Mainly Alpha › Orthogonal Bundle › Tyrosyl-Transfer RNA Synthetase › Tyrosyl-Transfer RNA Synthetase 0.77 72.0 6.30e-01 100.0% 69.9%
5ekdA02 1.10.240.10 Mainly Alpha › Orthogonal Bundle › Tyrosyl-Transfer RNA Synthetase › Tyrosyl-Transfer RNA Synthetase 0.75 65.0 5.94e-01 100.0% 72.1%
4heoA00 1.10.8.10 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain 0.69 44.0 5.22e-01 76.7% 100.0%
1s4kA00 1.10.3100.10 Mainly Alpha › Orthogonal Bundle › Putative cytoplasmic protein › Putative cytoplasmic protein 0.57 43.0 3.88e-01 88.4% 57.5%
4ci1B03 1.20.58.1480 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.56 41.0 4.48e-01 84.9% 95.7%
4gbmA00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.56 43.0 3.10e-01 86.0% 35.3%
3di5A00 1.20.120.450 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › dinb family like domain 0.55 47.0 4.06e-01 98.8% 65.8%
1oqcA00 1.20.120.310 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › ERV/ALR sulfhydryl oxidase domain 0.55 43.0 4.03e-01 87.2% 71.4%
1jdiA00 3.40.225.10 Alpha Beta › 3-Layer(aba) Sandwich › L-fuculose-1-phosphate Aldolase › Class II aldolase/adducin N-terminal domain 0.51 42.0 3.22e-01 94.2% 83.9%
ECOD (30)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4015705 2005.1.1.0 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains 1.00 97.0 5.95e-01 100.0% 21.2%
3933178 2005.1.1.2 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1b 1.00 97.0 6.01e-01 100.0% 22.6%
3797510 2005.1.1.0 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains 0.99 97.0 5.96e-01 100.0% 22.1%
3890206 2005.1.1.0 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains 0.98 95.0 6.19e-01 100.0% 28.7%
4961918 2005.1.1.2 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1b 0.97 93.0 5.75e-01 100.0% 22.1%
135810 2005.1.1.2 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1b 0.96 92.0 5.78e-01 100.0% 23.0%
4948751 2005.1.1.2 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1b 0.96 92.0 5.89e-01 100.0% 26.0%
1260984 2005.1.1.2 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1b 0.96 92.0 5.64e-01 100.0% 21.0%
5027854 2005.1.1.2 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1b 0.95 90.0 5.66e-01 100.0% 23.3%
3703161 2005.1.1.2 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1b 0.94 90.0 6.23e-01 100.0% 35.8%
3701871 2005.1.1.2 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1b 0.94 90.0 5.50e-01 100.0% 20.5%
4133327 2005.1.1.2 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1b 0.94 88.0 5.51e-01 100.0% 22.4%
5067873 2005.1.1.2 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1b 0.94 89.0 5.60e-01 100.0% 22.9%
5082433 2005.1.1.2 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1b 0.93 89.0 6.12e-01 100.0% 34.4%
5003581 2005.1.1.2 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1b 0.93 89.0 5.50e-01 100.0% 21.2%
5023951 2005.1.1.2 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1b 0.93 88.0 5.54e-01 100.0% 24.1%
5058738 2005.1.1.2 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1b 0.93 88.0 5.59e-01 100.0% 24.6%
5077374 2005.1.1.2 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1b 0.92 87.0 5.50e-01 100.0% 22.9%
5053430 2005.1.1.2 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1b 0.91 86.0 5.50e-01 100.0% 24.2%
4469624 2005.1.1.2 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1b 0.89 81.0 5.18e-01 100.0% 23.7%
2126485 2005.1.1.2 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1b 0.87 79.0 5.15e-01 100.0% 25.9%
4671800 2005.1.1.2 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1b 0.86 78.0 5.03e-01 100.0% 24.4%
3168097 616.1.1.15 ↗ alpha arrays › S15/NS1 RNA-binding domain › S15/NS1 RNA-binding domain › S15/NS1 RNA-binding domain › Sin3_corepress 0.67 55.0 4.78e-01 91.9% 64.4%
3880862 5086.1.1.64 ↗ alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › Sin3_corepress 0.65 53.0 4.70e-01 91.9% 66.2%
3755193 4146.1.1.7 ↗ alpha bundles › YqgQ-like › YqgQ-like › YqgQ-like › DMAP_binding 0.62 44.0 4.60e-01 89.5% 80.0%
3272337 3922.1.1.64 ↗ alpha bundles › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Sin3_corepress 0.59 48.0 4.42e-01 91.9% 70.4%
3380550 2002.1.1.93 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Glyco_hydro_77 0.54 43.0 2.55e-01 86.0% 25.6%
4927887 2484.1.1.10 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › TsaD 0.53 39.0 2.69e-01 87.2% 23.6%
4986713 3851.1.1.1 ↗ alpha arrays › OrfY › OrfY › OrfY › DUF5752 0.50 44.0 3.31e-01 96.5% 40.0%
4397495 206.1.1.70 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase, ABC1 0.50 38.0 2.55e-01 81.4% 94.5%