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U24159.1__AAB09186.1__X__00005

Bact-Vir

U24159.1__AAB09186.1__X__00005

Identity

Accession:
U24159 ↗
Kingdom:
phage

Quality

80.7 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Peduoviridae› Hpunavirus› Haemophilus_phage_HP1

TaxID: 2992577

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 20-96
PDB
Domain cluster: rep: ALT_07252016_14_scaffold_0_prodigal-single.1__X__X__00175__D6-74
CATH (53)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3u4vA00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.71 50.0 4.33e-01 72.7% 81.0%
3urgA02 2.30.30.530 Mainly Beta › Roll › SH3 type barrels. › Calcium binding protein CcbP, beta-barrel domain 0.71 51.0 5.57e-01 96.1% 93.7%
3j7aF03 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.69 49.0 5.09e-01 81.8% 80.3%
3iayA01 2.40.50.730 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.68 47.0 4.37e-01 71.4% 92.9%
2h1eA02 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.67 46.0 5.29e-01 77.9% 100.0%
3nvqA01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.67 46.0 2.81e-01 71.4% 33.1%
2gfaB01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.67 45.0 4.92e-01 81.8% 85.5%
1ci3M02 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.66 41.0 4.66e-01 93.5% 82.8%
3m9qA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.66 48.0 4.91e-01 76.6% 84.7%
6az1E03 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.66 44.0 4.59e-01 80.5% 75.0%
1olzA01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.66 45.0 2.74e-01 71.4% 34.9%
4gs3A00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.65 45.0 4.34e-01 72.7% 100.0%
1whlA00 2.30.30.190 Mainly Beta › Roll › SH3 type barrels. › CAP Gly-rich-like domain 0.65 49.0 4.60e-01 81.8% 83.2%
1xjvA01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.64 51.0 4.13e-01 84.4% 77.5%
1ue6D00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.64 47.0 4.34e-01 79.2% 99.0%
8aa9A01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.63 43.0 3.87e-01 72.7% 85.1%
2hx0A01 3.30.1330.80 Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › Hypothetical protein, similar to alpha- acetolactate decarboxylase; domain 2 0.62 50.0 4.21e-01 100.0% 51.5%
1q47A00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.62 43.0 2.63e-01 72.7% 22.5%
7cfdA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.61 39.0 3.98e-01 80.5% 67.1%
3kxtA00 2.30.30.610 Mainly Beta › Roll › SH3 type barrels. › Chromatin protein Cren7 0.61 42.0 4.71e-01 94.8% 98.2%
1icwB00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.61 42.0 4.49e-01 72.7% 84.8%
3deeA02 3.90.930.50 Alpha Beta › Alpha-Beta Complex › Outer Surface Protein A; domain 3 › 0.60 41.0 3.59e-01 77.9% 47.4%
5cbeE00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.60 39.0 4.21e-01 90.9% 81.2%
5umsA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.59 45.0 4.14e-01 100.0% 62.7%
3htnB00 3.30.1330.80 Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › Hypothetical protein, similar to alpha- acetolactate decarboxylase; domain 2 0.58 48.0 3.97e-01 100.0% 50.4%
6htnA01 2.120.10.70 Mainly Beta › 6 Propeller › Neuraminidase › Fucose-specific lectin 0.58 39.0 3.26e-01 70.1% 49.6%
4iupA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.58 42.0 4.39e-01 83.1% 83.3%
2czoA00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.58 42.0 3.58e-01 77.9% 72.3%
6pxcA00 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.57 41.0 3.71e-01 76.6% 70.2%
3k6yA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.56 45.0 4.15e-01 93.5% 81.3%
4xrtA02 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.56 39.0 3.08e-01 72.7% 93.8%
3otpA01 2.40.10.120 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.56 46.0 3.45e-01 93.5% 41.4%
2wweA01 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.56 40.0 3.66e-01 76.6% 77.9%
3c96A01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.55 48.0 3.79e-01 98.7% 52.4%
1h6hA00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.55 40.0 3.38e-01 77.9% 65.7%
4aw8A00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.55 46.0 3.47e-01 92.2% 63.4%
4e4fA01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.55 36.0 3.02e-01 77.9% 36.9%
3s5wA00 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.55 47.0 2.97e-01 94.8% 90.7%
2xp1A01 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.55 36.0 3.37e-01 74.0% 54.7%
2dt4A00 3.30.1330.80 Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › Hypothetical protein, similar to alpha- acetolactate decarboxylase; domain 2 0.54 47.0 3.85e-01 100.0% 51.7%
6mlyB01 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.54 37.0 2.60e-01 71.4% 31.3%
3buxB03 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.53 40.0 3.84e-01 77.9% 72.1%
3h51A00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.53 36.0 3.04e-01 70.1% 87.3%
1a31A03 3.90.15.10 Alpha Beta › Alpha-Beta Complex › Topoisomerase I; Chain A, domain 3 › Topoisomerase I; Chain A, domain 3 0.53 46.0 3.73e-01 98.7% 53.3%
3fyfA00 2.40.128.410 Mainly Beta › Beta Barrel › Lipocalin › 0.53 41.0 3.35e-01 84.4% 77.9%
4xrtA01 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.53 39.0 3.18e-01 77.9% 76.8%
3qwmA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.52 44.0 3.77e-01 96.1% 60.6%
3na2A00 3.40.1570.20 Alpha Beta › 3-Layer(aba) Sandwich › Heme iron utilization protein-like fold › 0.52 44.0 3.76e-01 100.0% 84.1%
3k44B00 3.30.2450.30 Alpha Beta › 2-Layer Sandwich › Secreted effector protein pipB2 fold › 0.51 43.0 3.60e-01 94.8% 90.0%
3f4lA02 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.51 42.0 3.10e-01 93.5% 95.1%
6ruiB04 3.90.1110.10 Alpha Beta › Alpha-Beta Complex › Dna-directed Rna Polymerase Ii 140kd Polypeptide; Chain: B; domain 3 › RNA polymerase Rpb2, domain 2 0.51 45.0 3.46e-01 100.0% 85.2%
1ar0A00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.50 40.0 3.43e-01 87.0% 78.4%
2i51B00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.50 41.0 3.13e-01 92.2% 71.2%
ECOD (61)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3811669 2.1.1.130 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › DUF223 0.78 54.0 4.73e-01 71.4% 88.2%
3282644 2.24.1.2 ↗ beta barrels › OB-fold › probable receptor YhhM › probable receptor YhhM › DUF7489 0.78 50.0 5.34e-01 85.7% 76.9%
5061147 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.78 61.0 5.65e-01 83.1% 74.7%
3190995 4.8.1.22 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › DUF7025 0.74 58.0 4.36e-01 83.1% 43.4%
4012953 4.8.1.0 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.73 58.0 4.57e-01 84.4% 51.3%
3296674 2.1.1.130 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › DUF223 0.72 49.0 4.39e-01 71.4% 88.2%
3591209 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.71 44.0 4.91e-01 70.1% 80.0%
3337303 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.71 49.0 5.04e-01 71.4% 94.7%
3736329 4.1.1.225 ↗ beta barrels › SH3 › SH3 › SH3 › DUF7025 0.71 56.0 4.19e-01 84.4% 42.8%
3314558 2.1.1.130 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › DUF223 0.70 48.0 3.94e-01 71.4% 67.4%
5043533 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.69 49.0 5.31e-01 81.8% 90.6%
3358498 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.69 47.0 4.32e-01 71.4% 84.0%
5073368 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.68 49.0 5.11e-01 81.8% 82.9%
3550699 4.8.1.10 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › MSL3_chromo-like 0.65 50.0 4.68e-01 84.4% 67.4%
3410370 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.65 47.0 4.95e-01 83.1% 85.7%
3281056 4205.1.1.0 ↗ a+b two layers › SMI1/KNR4-like › SMI1/KNR4-like › SMI1/KNR4-like 0.65 44.0 3.27e-01 70.1% 54.3%
4040055 4.26.1.1 ↗ beta barrels › SH3 › Chromatin protein Cren7 › Chromatin protein Cren7 › Cren7 0.64 41.0 4.63e-01 89.6% 86.2%
3886492 4.1.1.154 ↗ beta barrels › SH3 › SH3 › SH3 › DUF4772 0.63 47.0 4.76e-01 83.1% 82.7%
3230224 708.1.1.0 ↗ beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain 0.62 42.0 3.30e-01 70.1% 73.8%
3907176 4.1.1.248 ↗ beta barrels › SH3 › SH3 › SH3 › CABIT 0.62 46.0 4.39e-01 80.5% 71.1%
3969377 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.62 44.0 4.56e-01 89.6% 79.7%
5023617 4111.1.1.2 ↗ a+b two layers › AF0104/ALDC/Ptd012-like › AF0104/ALDC/Ptd012-like › AF0104/ALDC/Ptd012-like › PCC 0.61 48.0 4.03e-01 100.0% 48.9%
3624046 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.61 49.0 4.29e-01 100.0% 56.7%
3481723 214.1.1.1 ↗ a+b two layers › SH2 › SH2 › SH2 › SH2 0.61 45.0 3.88e-01 76.6% 67.8%
4927783 218.1.1.2 ↗ a+b two layers › Enolase-N/ribosomal protein › Enolase N-terminal domain-like › Enolase N-terminal domain-like › Enolase_N 0.61 41.0 3.59e-01 70.1% 84.2%
3934183 214.1.1.9 ↗ a+b two layers › SH2 › SH2 › SH2 › DUF7063 0.61 44.0 3.92e-01 75.3% 77.1%
3355345 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.60 43.0 4.51e-01 89.6% 82.9%
3172156 2.1.1.44 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Dna2 0.60 45.0 4.09e-01 80.5% 92.4%
4983382 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.59 52.0 4.39e-01 98.7% 70.8%
5076798 321.1.1.7 ↗ a+b two layers › Glutamine synthetase-like › Glutamine synthetase/guanido kinase › Glutamine synthetase/guanido kinase › GCS2 0.59 49.0 3.04e-01 89.6% 28.7%
3422528 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.59 42.0 4.71e-01 84.4% 96.7%
4038568 4041.1.1.1 ↗ a+b complex topology › insertion domain in beta subunit of DNA dependent RNA-polymerase › insertion domain in beta subunit of DNA dependent RNA-polymerase › insertion domain in beta subunit of DNA dependent RNA-polymerase › RNA_pol_Rpb2_2 0.59 42.0 3.23e-01 76.6% 91.1%
4939488 2484.1.1.34 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DNA_pol_B_exo1 0.59 44.0 2.98e-01 80.5% 92.1%
3615163 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.59 52.0 4.64e-01 97.4% 83.2%
3933294 214.1.1.1 ↗ a+b two layers › SH2 › SH2 › SH2 › SH2 0.58 41.0 3.73e-01 75.3% 72.4%
4550200 214.1.1.1 ↗ a+b two layers › SH2 › SH2 › SH2 › SH2 0.58 42.0 3.72e-01 76.6% 66.4%
3249214 214.1.1.1 ↗ a+b two layers › SH2 › SH2 › SH2 › SH2 0.57 42.0 3.59e-01 76.6% 60.0%
4456732 325.1.7.0 ↗ a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif 0.57 42.0 4.16e-01 83.1% 73.8%
4399358 218.1.1.2 ↗ a+b two layers › Enolase-N/ribosomal protein › Enolase N-terminal domain-like › Enolase N-terminal domain-like › Enolase_N 0.57 39.0 3.31e-01 71.4% 80.7%
5044400 321.1.1.0 ↗ a+b two layers › Glutamine synthetase-like › Glutamine synthetase/guanido kinase › Glutamine synthetase/guanido kinase 0.57 46.0 2.82e-01 87.0% 27.3%
4031151 4056.1.1.0 ↗ beta barrels › Barrel domain in upper collar protein › Barrel domain in upper collar protein › Barrel domain in upper collar protein 0.57 49.0 4.96e-01 96.1% 98.7%
4159881 220.1.1.197 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PF28623 0.57 49.0 4.59e-01 96.1% 92.6%
3257384 214.1.1.1 ↗ a+b two layers › SH2 › SH2 › SH2 › SH2 0.57 42.0 3.72e-01 77.9% 70.9%
3937472 214.1.1.1 ↗ a+b two layers › SH2 › SH2 › SH2 › SH2 0.57 41.0 3.72e-01 76.6% 71.4%
3225772 214.1.1.1 ↗ a+b two layers › SH2 › SH2 › SH2 › SH2 0.56 41.0 3.59e-01 76.6% 70.4%
4578663 325.1.7.0 ↗ a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif 0.56 43.0 4.57e-01 84.4% 90.0%
2987315 214.1.1.0 ↗ a+b two layers › SH2 › SH2 › SH2 0.56 40.0 3.23e-01 76.6% 48.3%
4266498 218.1.1.1 ↗ a+b two layers › Enolase-N/ribosomal protein › Enolase N-terminal domain-like › Enolase N-terminal domain-like › MR_MLE_N 0.55 36.0 3.38e-01 76.6% 53.7%
4675181 325.1.7.0 ↗ a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif 0.55 39.0 3.72e-01 76.6% 70.5%
4089593 330.6.1.1 ↗ a+b two layers › dsRBD-like › 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain › 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain › LeuA_dimer 0.55 39.0 3.33e-01 76.6% 78.5%
1384885 214.1.1.6 ↗ a+b two layers › SH2 › SH2 › SH2 › SH2_2 0.55 36.0 3.46e-01 74.0% 59.1%
3798360 214.1.1.0 ↗ a+b two layers › SH2 › SH2 › SH2 0.55 40.0 3.60e-01 76.6% 73.3%
1291499 218.1.1.1 ↗ a+b two layers › Enolase-N/ribosomal protein › Enolase N-terminal domain-like › Enolase N-terminal domain-like › MR_MLE_N 0.54 36.0 2.99e-01 77.9% 37.1%
4929364 896.1.1.0 ↗ a+b two layers › SRP9/14-like › Signal recognition particle alu RNA binding heterodimer SRP9/14-related › Signal recognition particle alu RNA binding heterodimer SRP9/14-related 0.54 41.0 4.34e-01 97.4% 98.5%
4106867 325.1.7.0 ↗ a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif 0.54 39.0 3.25e-01 76.6% 47.1%
1298711 9.1.1.13 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › ZinT 0.54 44.0 3.36e-01 92.2% 61.1%
None — 0.54 47.0 2.92e-01 98.7% 38.2%
4435672 325.1.7.0 ↗ a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif 0.54 38.0 4.09e-01 81.8% 89.2%
4349950 325.1.7.0 ↗ a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif 0.52 37.0 4.11e-01 81.8% 96.7%
3232445 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.51 29.0 3.26e-01 90.9% 71.7%
3875866 9.1.1.11 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › Lipocalin_2 0.50 44.0 3.46e-01 100.0% 62.4%