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U59

Euk-Vir

Human_betaherpesvirus_6A

U59__NP_042952__Human_betaherpesvirus_6A__32603

Identity

Accession:: NP_042952 ↗
Protein ID:: U59
Kingdom:: euk

Quality

71.7 mean pLDDT

Taxonomy

Heunggongvirae› Peploviricota› Herviviricetes› Herpesvirales› Orthoherpesviridae› Roseolovirus› Human_betaherpesvirus_6A

TaxID: 32603

Cluster

View cluster (21 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 5-132

PDB

Domain cluster: rep: tegument_protein_UL88__YP_002608280__Human_herpesvirus_5__10359__D21-114_139-191

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF04529.18 best	Herpes_U59	173.7	8.40e-51	100.0%	39.2%

D2 high residues 160-245

PDB

D3 high residues 249-347

PDB

Domain cluster: rep: E88__YP_007016485__Murid_betaherpesvirus_8__1261657__D330-411

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF04529.18 best	Herpes_U59	96.9	2.00e-27	98.0%	27.1%

CATH (8)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2hoqA02	1.10.150.520	Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 ›	0.58	44.0	4.83e-01	89.9%	100.0%
1f0jA00	1.10.1300.10	Mainly Alpha › Orthogonal Bundle › Catalytic domain of cyclic nucleotide phosphodiesterase 4b2b › 3'5'-cyclic nucleotide phosphodiesterase, catalytic domain	0.56	39.0	2.76e-01	73.7%	54.4%
3w6bB00	1.10.530.10	Mainly Alpha › Orthogonal Bundle › Lysozyme ›	0.54	43.0	3.82e-01	87.9%	82.4%
2w4sA00	1.10.10.1440	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › PHAX RNA-binding domain	0.54	34.0	3.65e-01	99.0%	72.1%
7w3rB01	3.90.70.10	Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases	0.54	44.0	3.12e-01	89.9%	77.7%
3b89A01	1.10.8.10	Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain	0.54	29.0	3.54e-01	77.8%	90.7%
1rrmA02	1.20.1090.10	Mainly Alpha › Up-down Bundle › Dehydroquinate synthase-like, alpha domain › Dehydroquinate synthase-like - alpha domain	0.53	42.0	3.36e-01	85.9%	60.5%
1xg2B00	1.20.140.40	Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Invertase/pectin methylesterase inhibitor family protein	0.50	40.0	3.52e-01	86.9%	92.1%

ECOD (13)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3705627	524.1.1.0 ↗	alpha arrays › Ypt/Rab-GAP domain of gyp1p-like › Ypt/Rab-GAP domain of gyp1p › Ypt/Rab-GAP domain of gyp1p	0.72	37.0	3.34e-01	75.8%	36.3%
3981441	148.1.3.0 ↗	alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain	0.61	33.0	3.80e-01	77.8%	70.7%
3789417	101.1.1.0 ↗	alpha arrays › HTH › HTH › Three-helical HTH	0.60	34.0	3.20e-01	100.0%	47.8%
3992442	592.7.1.1 ↗	alpha arrays › PWI domain-like › GIPC1 GH2 domain › GIPC1 GH2 domain › GIPC1_GH2	0.56	39.0	4.21e-01	73.7%	97.6%
3491512	4156.1.1.4 ↗	alpha arrays › Sec63 N-terminal subdomain-like › Sec63 N-terminal subdomain-like › Sec63 N-terminal subdomain-like › HA2_C	0.56	43.0	3.69e-01	89.9%	52.3%
3231758	4156.1.1.11 ↗	alpha arrays › Sec63 N-terminal subdomain-like › Sec63 N-terminal subdomain-like › Sec63 N-terminal subdomain-like › HA2_N	0.55	43.0	3.29e-01	89.9%	36.4%
3286208	620.1.1.5 ↗	alpha bundles › YfiT-like putative metal-dependent hydrolases › YfiT-like putative metal-dependent hydrolases › YfiT-like putative metal-dependent hydrolases › MDMPI_N	0.53	42.0	3.79e-01	85.9%	98.5%
4570259	4156.1.1.4 ↗	alpha arrays › Sec63 N-terminal subdomain-like › Sec63 N-terminal subdomain-like › Sec63 N-terminal subdomain-like › HA2_C	0.53	43.0	3.64e-01	89.9%	58.2%
3179942	4156.1.1.4 ↗	alpha arrays › Sec63 N-terminal subdomain-like › Sec63 N-terminal subdomain-like › Sec63 N-terminal subdomain-like › HA2_C	0.52	41.0	3.45e-01	85.9%	79.4%
4976005	601.7.1.34 ↗	alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain › DUF4129	0.51	40.0	3.95e-01	81.8%	84.5%
4292319	2005.1.1.0 ↗	a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains	0.51	39.0	2.52e-01	83.8%	43.3%
3565104	2004.1.1.0 ↗	a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases	0.51	40.0	2.41e-01	86.9%	61.4%
3645906	2004.1.1.508 ↗	a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › UvrD_C, UvrD_C_2	0.51	41.0	2.72e-01	85.9%	43.7%