Back to structures

U91583.1__AAB58384.1__X__00001

Bact-Vir

U91583.1__AAB58384.1__X__00001

Identity

Accession:
U91583 ↗
Kingdom:
phage

Quality

93.5 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 42-94
PDB
CATH (18)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
6jgwA01 1.10.1660.10 Mainly Alpha › Orthogonal Bundle › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 › 0.89 76.0 5.67e-01 100.0% 40.5%
3gp4B00 1.10.1660.10 Mainly Alpha › Orthogonal Bundle › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 › 0.89 75.0 5.52e-01 100.0% 37.7%
5d8cA00 1.10.1660.10 Mainly Alpha › Orthogonal Bundle › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 › 0.86 73.0 5.43e-01 100.0% 38.9%
3hh0A01 1.10.1660.10 Mainly Alpha › Orthogonal Bundle › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 › 0.83 70.0 6.29e-01 100.0% 68.1%
3ez2A01 1.10.1660.30 Mainly Alpha › Orthogonal Bundle › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 › 0.70 58.0 5.40e-01 100.0% 77.1%
4lhfA00 6.10.200.10 Special › Helix non-globular › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 › Regulatory phage protein Cox 0.64 53.0 4.72e-01 96.2% 68.4%
5wzoA00 1.20.90.10 Mainly Alpha › Up-down Bundle › Phospholipase A2 › Phospholipase A2 domain 0.62 51.0 4.07e-01 100.0% 78.9%
6l2cB00 3.40.47.10 Alpha Beta › 3-Layer(aba) Sandwich › Peroxisomal Thiolase; Chain A, domain 1 › Thiolase/Chalcone synthase 0.60 44.0 2.68e-01 79.2% 74.7%
1zcdA00 1.20.1530.10 Mainly Alpha › Up-down Bundle › Na+/H+ antiporter like fold › Na+/H+ antiporter like domain 0.55 46.0 2.83e-01 100.0% 66.0%
3f8xB00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.55 46.0 3.57e-01 100.0% 68.2%
5y2vC01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.54 43.0 3.75e-01 90.6% 64.7%
3llcA00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.54 45.0 2.97e-01 100.0% 80.1%
3e9lA02 1.20.80.40 Mainly Alpha › Up-down Bundle › Acyl-CoA Binding Protein › Prp8 RNase H domain, fingers region 0.53 44.0 3.77e-01 100.0% 65.3%
1lnwF01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.52 42.0 3.21e-01 90.6% 38.7%
2zihC00 1.10.3630.10 Mainly Alpha › Orthogonal Bundle › yeast vps74-n-term truncation variant fold › yeast vps74-n-term truncation variant domain like 0.51 39.0 2.61e-01 92.5% 60.2%
2eshA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.51 39.0 3.26e-01 94.3% 64.9%
6ln0A02 1.10.8.1190 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Papain-like viral protease, thumb domain 0.51 41.0 3.44e-01 96.2% 58.7%
6uvuA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.51 41.0 3.41e-01 100.0% 48.1%
ECOD (20)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4117084 101.1.9.0 alpha arrays › HTH › HTH › Putative DNA-binding domain 0.98 94.0 7.29e-01 100.0% 53.0%
4197446 101.1.9.17 alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR_1 0.94 82.0 5.84e-01 100.0% 36.3%
4672676 101.1.9.17 alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR_1 0.91 78.0 5.57e-01 100.0% 35.0%
4536234 101.1.9.82 alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR-DNA-bind, MerR_1 0.90 77.0 5.83e-01 100.0% 42.6%
4284807 101.1.9.82 alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR-DNA-bind, MerR_1 0.89 75.0 5.42e-01 100.0% 35.0%
4031764 101.1.9.17 alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR_1 0.87 74.0 5.34e-01 100.0% 35.5%
3587879 101.1.9.36 alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR 0.85 72.0 5.59e-01 100.0% 44.5%
3946914 101.1.9.82 alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR-DNA-bind, MerR_1 0.84 71.0 5.24e-01 100.0% 37.7%
3281873 101.1.9.84 alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR, MerR_1 0.84 69.0 4.48e-01 100.0% 21.3%
3943951 101.1.9.45 alpha arrays › HTH › HTH › Putative DNA-binding domain › Phage_AlpA 0.77 64.0 6.01e-01 100.0% 76.9%
4056248 101.1.9.0 alpha arrays › HTH › HTH › Putative DNA-binding domain 0.75 65.0 4.87e-01 100.0% 40.0%
3957229 101.1.9.0 alpha arrays › HTH › HTH › Putative DNA-binding domain 0.66 55.0 5.39e-01 98.1% 88.3%
3672413 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.57 42.0 3.66e-01 86.8% 48.9%
3847960 371.1.1.1 few secondary structure elements › Phospholipase A2, PLA2 › Phospholipase A2, PLA2 › Phospholipase A2, PLA2 › Phospholip_A2_1 0.55 44.0 3.52e-01 100.0% 79.2%
5050160 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.55 45.0 3.96e-01 96.2% 63.5%
4572712 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.54 41.0 3.01e-01 90.6% 30.0%
3409488 2006.1.4.9 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › RNase_Zc3h12a 0.52 42.0 3.04e-01 100.0% 67.4%
3404575 101.1.15.1 alpha arrays › HTH › HTH › HAT1, C-terminal domain › MOZ_SAS 0.52 40.0 3.55e-01 90.6% 68.9%
5024286 101.1.9.134 alpha arrays › HTH › HTH › Putative DNA-binding domain › DUF2067 0.52 42.0 4.00e-01 100.0% 78.6%
3533128 101.1.2.506 alpha arrays › HTH › HTH › winged helix domain › HTH_NWD1 0.51 36.0 3.01e-01 79.2% 79.1%
D2 high residues 120-206
PDB
Domain cluster: representative
CATH (18)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
6iubA00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.93 83.0 5.68e-01 100.0% 31.1%
6nonA01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.88 77.0 5.38e-01 100.0% 32.9%
1wcv100 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.88 72.0 5.10e-01 100.0% 31.3%
1g3qA00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.84 75.0 5.30e-01 98.9% 34.6%
6z0pB01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.82 66.0 4.75e-01 100.0% 31.6%
3k9gA00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.82 75.0 5.40e-01 100.0% 37.6%
3ez2A02 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.82 76.0 5.15e-01 100.0% 32.2%
2vedA00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.80 69.0 4.86e-01 100.0% 31.7%
2p10C01 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.60 42.0 3.03e-01 73.6% 42.6%
3k4hA02 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.55 39.0 3.40e-01 75.9% 58.5%
1m6nA03 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.55 41.0 3.35e-01 88.5% 40.8%
2fepA02 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.55 39.0 3.34e-01 74.7% 58.6%
1in4A01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.54 46.0 3.91e-01 97.7% 78.5%
3bblA02 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.53 38.0 3.26e-01 74.7% 52.4%
2ji7A03 3.40.50.970 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Thiamin diphosphate (ThDP)-binding fold, Pyr/PP domains 0.52 45.0 3.44e-01 98.9% 46.2%
3l49A02 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.51 36.0 3.09e-01 74.7% 53.7%
2dr3A00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.50 44.0 3.28e-01 100.0% 46.1%
2x7jA03 3.40.50.970 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Thiamin diphosphate (ThDP)-binding fold, Pyr/PP domains 0.50 43.0 3.38e-01 100.0% 62.9%
ECOD (42)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4258689 2004.1.1.206 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_31 0.99 97.0 6.36e-01 100.0% 30.2%
3591070 2004.1.1.419 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Fer4_NifH, AAA_31 0.94 85.0 5.82e-01 100.0% 32.2%
4598964 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.94 85.0 5.71e-01 100.0% 30.4%
4953951 2004.1.1.206 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_31 0.93 84.0 5.77e-01 100.0% 32.2%
2448312 2004.1.1.437 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ParA, AAA_31 0.93 83.0 5.68e-01 100.0% 31.1%
None 0.93 83.0 5.68e-01 100.0% 31.3%
4981022 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.92 82.0 5.61e-01 100.0% 31.8%
4981156 2004.1.1.206 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_31 0.92 82.0 5.62e-01 100.0% 30.9%
4433612 2004.1.1.465 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › MipZ, AAA_31 0.91 86.0 5.52e-01 100.0% 25.7%
3961468 2004.1.1.437 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ParA, AAA_31 0.91 82.0 5.54e-01 100.0% 30.2%
4113327 2004.1.1.465 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › MipZ, AAA_31 0.91 82.0 5.52e-01 100.0% 29.9%
3963191 2004.1.1.437 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ParA, AAA_31 0.90 83.0 5.52e-01 100.0% 29.0%
4197041 2004.1.1.206 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_31 0.90 80.0 5.53e-01 100.0% 32.2%
3282485 2004.1.1.465 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › MipZ, AAA_31 0.90 81.0 5.42e-01 100.0% 28.6%
2475365 2004.1.1.206 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_31 0.89 78.0 5.37e-01 100.0% 30.9%
4950856 2004.1.1.206 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_31 0.88 83.0 5.53e-01 100.0% 29.7%
5004232 2004.1.1.206 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_31 0.87 77.0 5.33e-01 100.0% 31.8%
4961293 2004.1.1.206 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_31 0.87 78.0 5.29e-01 100.0% 29.5%
3967454 2004.1.1.437 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ParA, AAA_31 0.86 81.0 5.57e-01 100.0% 35.3%
3968041 2004.1.1.206 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_31 0.85 80.0 5.55e-01 100.0% 34.1%
3602584 2004.1.1.465 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › MipZ, AAA_31 0.85 79.0 5.49e-01 100.0% 33.6%
3948164 2004.1.1.206 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_31 0.85 78.0 5.20e-01 100.0% 33.3%
5014592 2004.1.1.206 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_31 0.84 75.0 5.25e-01 98.9% 33.5%
4291653 2004.1.1.206 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_31 0.83 78.0 5.21e-01 100.0% 31.5%
376500 2004.1.1.206 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_31 0.83 76.0 5.42e-01 100.0% 37.1%
4966162 2004.1.1.206 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_31 0.81 75.0 5.08e-01 100.0% 33.3%
4372556 2004.1.1.206 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_31 0.81 69.0 5.07e-01 100.0% 37.6%
3589227 2004.1.1.206 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_31 0.80 72.0 4.80e-01 100.0% 27.7%
344699 2004.1.1.206 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_31 0.80 68.0 4.80e-01 100.0% 31.1%
5046865 2004.1.1.206 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_31 0.80 71.0 4.93e-01 100.0% 31.3%
5031826 2004.1.1.206 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_31 0.79 73.0 5.74e-01 100.0% 52.4%
4936586 2004.1.1.206 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_31 0.77 70.0 5.86e-01 100.0% 59.3%
4938439 2004.1.1.67 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › CbiA 0.68 61.0 5.21e-01 100.0% 61.4%
4189161 7588.1.1.1 a/b three-layered sandwiches › NadA-like/4-hydroxy-3-methylbut-2-enyl diphosphate reductase › NadA-like/4-hydroxy-3-methylbut-2-enyl diphosphate reductase › NadA-like/4-hydroxy-3-methylbut-2-enyl diphosphate reductase › LYTB 0.67 35.0 3.48e-01 87.4% 46.3%
4387146 7588.1.1.1 a/b three-layered sandwiches › NadA-like/4-hydroxy-3-methylbut-2-enyl diphosphate reductase › NadA-like/4-hydroxy-3-methylbut-2-enyl diphosphate reductase › NadA-like/4-hydroxy-3-methylbut-2-enyl diphosphate reductase › LYTB 0.67 36.0 3.42e-01 87.4% 44.0%
3955660 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.60 47.0 3.33e-01 93.1% 27.9%
3979599 2004.1.1.305 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › IcmF-related_N 0.53 38.0 2.55e-01 75.9% 59.7%
5083140 2004.1.1.146 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ATPase 0.51 45.0 3.39e-01 100.0% 49.3%
4993530 2004.1.1.146 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ATPase 0.51 44.0 3.27e-01 100.0% 48.8%
4022761 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.51 42.0 3.22e-01 95.4% 85.5%
5005192 2004.1.1.146 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ATPase 0.50 42.0 3.15e-01 96.6% 69.6%
4944399 2004.1.1.29 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DEAD 0.50 43.0 3.37e-01 100.0% 89.5%