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UL104

Euk-Vir

Papio_ursinus_cytomegalovirus

UL104__YP_009137449__Papio_ursinus_cytomegalovirus__1667587

Identity

Accession:
YP_009137449 ↗
Protein ID:
UL104
Kingdom:
euk

Quality

75.8 mean pLDDT

Taxonomy

Heunggongvirae› Peploviricota› Herviviricetes› Herpesvirales› Orthoherpesviridae› Cytomegalovirus› Papio_ursinus_cytomegalovirus

TaxID: 1667587

Cluster

View cluster (76 members)

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 150-282
PDB
Domain cluster: rep: JM72__YP_238375__Macaca_fuscata_rhadinovirus__272551__D50-239
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF01763.23 best Herpes_UL6 79.2 3.40e-22 100.0% 23.6%
D2 medium residues 320-376
PDB
D3 medium residues 509-563
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF01763.23 best Herpes_UL6 70.0 2.10e-19 100.0% 10.1%
CATH (50)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3pqkA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.70 48.0 3.94e-01 80.0% 39.4%
2gxgA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.65 49.0 3.72e-01 83.6% 35.0%
2fbiA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.63 48.0 3.70e-01 89.1% 34.6%
4gyiA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.63 45.0 3.87e-01 81.8% 45.2%
4hqeA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.62 46.0 3.85e-01 85.5% 42.9%
2v79A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.62 50.0 4.08e-01 94.5% 51.3%
3qaoA00 1.10.1660.10 Mainly Alpha › Orthogonal Bundle › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 › 0.60 51.0 3.85e-01 96.4% 71.4%
3cjnA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.60 43.0 3.24e-01 83.6% 29.5%
3m8eA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.60 44.0 3.71e-01 89.1% 43.6%
5e1wA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.60 43.0 3.17e-01 85.5% 26.2%
7npaA02 3.30.70.3340 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.59 39.0 3.46e-01 76.4% 44.7%
7dvrA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.59 46.0 3.54e-01 89.1% 35.5%
5d9hA02 1.10.510.10 Mainly Alpha › Orthogonal Bundle › Transferase(Phosphotransferase); domain 1 › Transferase(Phosphotransferase) domain 1 0.59 45.0 3.11e-01 85.5% 26.7%
3l7wA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.58 43.0 3.56e-01 83.6% 42.9%
2wa0A01 1.10.10.1200 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › MAGE homology domain, winged helix WH1 motif 0.58 44.0 3.67e-01 92.7% 45.5%
2obpA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.58 41.0 3.74e-01 87.3% 53.1%
2f2eA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.58 43.0 3.73e-01 89.1% 50.5%
1s7hA02 3.30.70.930 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.57 38.0 3.41e-01 85.5% 46.3%
4ejoA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.57 44.0 3.52e-01 83.6% 43.8%
4wp3C00 3.30.70.1230 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Nucleotide cyclase, GGDEF domain 0.57 48.0 3.39e-01 98.2% 63.6%
1p4xA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.57 43.0 3.50e-01 89.1% 41.5%
8agaA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.57 43.0 3.41e-01 87.3% 37.3%
2fbhA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.57 44.0 3.42e-01 89.1% 36.5%
2v4jB01 3.30.70.3340 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.56 39.0 3.07e-01 78.2% 31.1%
2dy1A03 3.30.70.870 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Elongation Factor G (Translational Gtpase), domain 3 0.56 39.0 3.59e-01 74.5% 53.9%
4esbA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.56 43.0 3.63e-01 87.3% 49.5%
3zcoA00 1.10.10.2450 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.56 40.0 3.18e-01 89.1% 34.6%
2pg4A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.56 42.0 3.65e-01 87.3% 51.6%
2e9yB00 3.40.1160.10 Alpha Beta › 3-Layer(aba) Sandwich › Carbamate kinase › Acetylglutamate kinase-like 0.56 43.0 2.69e-01 83.6% 92.0%
6abqB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.55 42.0 3.47e-01 87.3% 44.3%
1whrA00 3.30.1370.50 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › R3H-like domain 0.55 37.0 2.95e-01 74.5% 31.5%
3mwmA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.55 36.0 3.38e-01 72.7% 50.7%
7xc2A02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.55 41.0 3.45e-01 100.0% 45.3%
2fgcA03 3.30.70.1150 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT-like. Chain A, domain 2 0.54 35.0 3.24e-01 76.4% 48.7%
3u1kB04 3.30.1370.10 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › K Homology domain, type 1 0.54 36.0 3.40e-01 76.4% 54.2%
1pc6A00 1.10.3790.10 Mainly Alpha › Orthogonal Bundle › NinB fold › NinB 0.54 39.0 2.93e-01 78.2% 83.7%
1zfjA00 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.53 43.0 2.54e-01 94.5% 65.8%
3jcmH04 3.30.70.870 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Elongation Factor G (Translational Gtpase), domain 3 0.52 37.0 3.37e-01 80.0% 54.5%
1fpqA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.52 40.0 3.18e-01 89.1% 40.3%
7uvpA02 3.30.70.870 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Elongation Factor G (Translational Gtpase), domain 3 0.52 36.0 3.38e-01 74.5% 58.0%
3i8nB00 3.10.580.10 Alpha Beta › Roll › CBS-domain › CBS-domain 0.52 38.0 3.01e-01 81.8% 48.4%
2ef7A00 3.10.580.10 Alpha Beta › Roll › CBS-domain › CBS-domain 0.51 39.0 2.96e-01 81.8% 79.4%
3ddjA01 3.10.580.10 Alpha Beta › Roll › CBS-domain › CBS-domain 0.51 41.0 3.10e-01 89.1% 80.9%
2nycA00 3.10.580.10 Alpha Beta › Roll › CBS-domain › CBS-domain 0.51 40.0 3.11e-01 89.1% 79.2%
3cuoD00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.51 39.0 3.40e-01 89.1% 55.3%
3ocoA00 3.10.580.10 Alpha Beta › Roll › CBS-domain › CBS-domain 0.51 37.0 2.88e-01 81.8% 75.0%
1uw4A00 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.51 28.0 2.37e-01 74.5% 28.6%
3ctuA00 3.10.580.10 Alpha Beta › Roll › CBS-domain › CBS-domain 0.51 40.0 3.08e-01 94.5% 74.5%
3pieA02 3.30.1370.250 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › 0.50 39.0 3.38e-01 92.7% 89.0%
3kh5A01 3.10.580.10 Alpha Beta › Roll › CBS-domain › CBS-domain 0.50 40.0 3.04e-01 90.9% 86.6%
ECOD (72)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3587190 282.1.1.1 ↗ a+b duplicates or obligate multimers › CBS-domain › CBS-domain › CBS-domain › CBS 0.74 38.0 2.66e-01 72.7% 16.8%
5001357 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.68 50.0 4.19e-01 87.3% 45.0%
4081838 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.66 42.0 3.88e-01 74.5% 48.0%
138578 101.1.2.14 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_5 0.65 44.0 3.76e-01 81.8% 40.6%
3174392 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.64 42.0 3.80e-01 80.0% 47.5%
3919567 101.1.2.178 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_61 0.64 50.0 4.17e-01 92.7% 49.5%
5048954 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.63 44.0 3.55e-01 78.2% 35.7%
5078260 2003.1.5.0 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases 0.63 43.0 2.78e-01 78.2% 15.0%
4014246 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.63 48.0 3.02e-01 83.6% 15.6%
3604748 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.63 50.0 3.37e-01 89.1% 56.7%
5082589 101.1.2.14 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_5 0.63 46.0 4.17e-01 85.5% 56.2%
4435772 5104.1.1.0 ↗ a+b three layers › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases 0.62 41.0 3.12e-01 81.8% 30.1%
4980177 101.1.2.150 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_45 0.62 48.0 3.87e-01 89.1% 40.8%
3223770 327.11.2.0 ↗ a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) 0.62 40.0 3.76e-01 76.4% 52.9%
3944068 101.1.2.26 ↗ alpha arrays › HTH › HTH › winged helix domain › HxlR 0.62 45.0 3.48e-01 81.8% 34.4%
4370980 101.1.2.637 ↗ alpha arrays › HTH › HTH › winged helix domain › DUF3375 0.61 43.0 3.62e-01 80.0% 40.9%
4649222 101.1.2.15 ↗ alpha arrays › HTH › HTH › winged helix domain › MarR 0.61 45.0 3.60e-01 89.1% 36.2%
5005196 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.61 45.0 4.09e-01 89.1% 56.2%
3632795 101.1.2.309 ↗ alpha arrays › HTH › HTH › winged helix domain › GPAT_C 0.61 46.0 3.77e-01 85.5% 44.5%
3587282 142.1.1.10 ↗ alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors › HTH_16 0.60 33.0 2.99e-01 76.4% 42.9%
5065249 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.60 43.0 3.77e-01 76.4% 48.2%
5040871 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.60 47.0 4.23e-01 89.1% 62.5%
5041741 304.8.1.0 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.60 42.0 3.81e-01 76.4% 54.7%
1888715 101.1.2.135 ↗ alpha arrays › HTH › HTH › winged helix domain › MarR_2 0.60 43.0 3.35e-01 85.5% 32.4%
3666925 101.1.2.386 ↗ alpha arrays › HTH › HTH › winged helix domain › WH_DRP 0.59 45.0 3.49e-01 83.6% 36.0%
3205602 101.1.2.281 ↗ alpha arrays › HTH › HTH › winged helix domain › Tfb2 0.59 46.0 4.02e-01 90.9% 54.4%
3942501 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.59 41.0 3.59e-01 81.8% 45.6%
3487912 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.59 42.0 3.42e-01 78.2% 39.1%
4025592 101.1.2.281 ↗ alpha arrays › HTH › HTH › winged helix domain › Tfb2 0.59 44.0 3.65e-01 89.1% 43.6%
4641033 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.58 41.0 3.55e-01 83.6% 45.6%
5072417 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.58 41.0 3.33e-01 78.2% 35.8%
3213842 5001.1.1.0 ↗ alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like 0.58 49.0 3.15e-01 98.2% 96.5%
3718665 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.58 43.0 3.82e-01 89.1% 52.9%
3287283 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.58 40.0 3.18e-01 78.2% 36.4%
3948634 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.58 43.0 3.68e-01 83.6% 49.5%
4021330 304.37.1.0 ↗ a+b two layers › Alpha-beta plaits › Sulfite reductase, domains 1 and 3 › Sulfite reductase, domains 1 and 3 0.57 39.0 3.51e-01 83.6% 48.8%
4399101 101.1.2.88 ↗ alpha arrays › HTH › HTH › winged helix domain › Dimerisation 0.57 39.0 3.27e-01 81.8% 37.3%
3954543 101.1.2.135 ↗ alpha arrays › HTH › HTH › winged helix domain › MarR_2 0.57 45.0 3.36e-01 87.3% 74.8%
3404332 304.7.1.1 ↗ a+b two layers › Alpha-beta plaits › Protease propeptides/inhibitors › Protease propeptides/inhibitors › Propep_M14 0.57 37.0 3.23e-01 76.4% 41.1%
4651301 101.1.2.88 ↗ alpha arrays › HTH › HTH › winged helix domain › Dimerisation 0.57 42.0 3.50e-01 89.1% 41.7%
4572131 267.1.1.3 ↗ a+b complex topology › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain › Cation_ATPase 0.56 41.0 2.66e-01 78.2% 25.2%
5041662 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.56 44.0 3.81e-01 90.9% 88.4%
3782612 7502.1.1.1 ↗ a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › HGTP_anticodon 0.56 37.0 2.75e-01 80.0% 23.9%
3700856 327.11.2.0 ↗ a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) 0.56 42.0 3.56e-01 89.1% 46.0%
4968342 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.56 37.0 3.09e-01 76.4% 36.2%
4969597 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.56 41.0 3.09e-01 83.6% 31.0%
4108761 101.1.2.386 ↗ alpha arrays › HTH › HTH › winged helix domain › WH_DRP 0.56 44.0 3.37e-01 98.2% 34.7%
3988603 101.1.2.92 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_11 0.56 43.0 3.73e-01 83.6% 57.6%
3373537 109.4.1.1297 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TIMELESS, PF27570 0.56 43.0 2.44e-01 85.5% 7.9%
3997731 304.24.1.0 ↗ a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like 0.55 40.0 3.53e-01 76.4% 52.5%
5035783 304.120.1.6 ↗ a+b two layers › Alpha-beta plaits › Ferredoxin-like domain in ThiI › Ferredoxin-like domain in ThiI › ThiI_fer 0.55 45.0 3.97e-01 89.1% 63.7%
3229160 5001.1.1.60 ↗ alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7TM_GPCR_Srx 0.55 45.0 2.88e-01 92.7% 95.5%
4344708 101.1.2.311 ↗ alpha arrays › HTH › HTH › winged helix domain › RNA12 0.55 40.0 3.48e-01 89.1% 48.4%
4028881 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.54 44.0 2.72e-01 98.2% 15.7%
4942265 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.54 41.0 3.71e-01 90.9% 57.6%
5058358 101.1.2.110 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_IclR 0.54 39.0 3.51e-01 89.1% 52.9%
3684131 2485.1.1.1 ↗ a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › Thioredoxin 0.54 32.0 2.86e-01 70.9% 36.5%
4221576 327.11.2.38 ↗ a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › KH_SLS1_1 0.54 36.0 3.46e-01 76.4% 60.0%
3405197 304.7.1.1 ↗ a+b two layers › Alpha-beta plaits › Protease propeptides/inhibitors › Protease propeptides/inhibitors › Propep_M14 0.54 36.0 3.26e-01 81.8% 48.8%
3314559 101.1.2.74 ↗ alpha arrays › HTH › HTH › winged helix domain › Cnd2 0.53 40.0 3.55e-01 87.3% 98.9%
5038210 282.1.1.1 ↗ a+b duplicates or obligate multimers › CBS-domain › CBS-domain › CBS-domain › CBS 0.53 40.0 2.89e-01 81.8% 85.0%
3920955 5050.1.1.6 ↗ alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › OATP 0.53 43.0 2.90e-01 98.2% 100.0%
3589866 101.1.2.66 ↗ alpha arrays › HTH › HTH › winged helix domain › Mga 0.53 39.0 3.43e-01 81.8% 54.1%
4034263 101.1.2.66 ↗ alpha arrays › HTH › HTH › winged helix domain › Mga 0.53 38.0 3.43e-01 81.8% 52.9%
5036255 241.1.1.0 ↗ a+b two layers › Type III secretory system chaperone-like › Type III secretory system chaperone › Type III secretory system chaperone 0.52 38.0 3.10e-01 80.0% 97.4%
3714022 304.24.1.3 ↗ a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like › EFG_III 0.52 35.0 3.41e-01 74.5% 63.3%
4939541 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.52 39.0 3.14e-01 81.8% 37.8%
4030665 304.24.1.3 ↗ a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like › EFG_III 0.52 38.0 3.26e-01 81.8% 47.8%
3597940 327.11.2.0 ↗ a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) 0.52 36.0 3.17e-01 83.6% 46.7%
4200948 242.1.1.2 ↗ a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_2 0.52 39.0 3.28e-01 83.6% 62.0%
3386110 306.3.1.0 ↗ a+b two layers › Glucose permease domain IIB-like › eIF1-like › eIF1-like 0.50 35.0 3.03e-01 76.4% 45.6%
4032391 101.1.2.92 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_11 0.50 36.0 3.22e-01 87.3% 50.6%
D4 medium residues 564-614
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF01763.23 best Herpes_UL6 27.6 1.40e-06 82.3% 7.3%
CATH (2)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1c0aA02 3.30.930.10 Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 0.69 50.0 2.99e-01 76.5% 13.8%
4h9nC00 1.20.58.2170 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.67 46.0 2.97e-01 90.2% 17.6%