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UL29

Euk-Vir

Anatid_alphaherpesvirus_1

UL29__YP_003084392__Anatid_alphaherpesvirus_1__104388

Identity

Accession:: YP_003084392 ↗
Protein ID:: UL29
Kingdom:: euk

Quality

71.9 mean pLDDT

Taxonomy

Heunggongvirae› Peploviricota› Herviviricetes› Herpesvirales› Orthoherpesviridae› Mardivirus› anatid_alphaherpesvirus_1

TaxID: 104388

Cluster

View cluster (33 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 1058-1138

PDB

Domain cluster: rep: single-stranded_DNA-binding_protein__YP_182358__Gallid_alphaherpesvirus_1__10386__D872-948

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF00747.23 best	Viral_DNA_bp	30.4	8.80e-08	100.0%	6.8%

CATH (24)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
1urjA03	1.10.150.560	Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 ›	0.94	86.0	8.61e-01	100.0%	95.1%
3rq9A00	1.10.287.2500	Mainly Alpha › Orthogonal Bundle › Helix Hairpins ›	0.65	36.0	3.67e-01	90.1%	56.4%
1br2A03	1.20.120.720	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Myosin VI head, motor domain, U50 subdomain	0.62	47.0	4.46e-01	90.1%	69.5%
4eqqA02	1.10.10.10	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain	0.61	37.0	4.31e-01	75.3%	100.0%
3bjdA01	1.10.1240.20	Mainly Alpha › Orthogonal Bundle › Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 › Lytic transglycosylase, superhelical linker domain	0.59	43.0	4.24e-01	77.8%	84.1%
3o7pA01	1.20.1250.20	Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › MFS general substrate transporter like domains	0.59	40.0	3.02e-01	71.6%	78.0%
2yksA02	1.20.58.390	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Neurotransmitter-gated ion-channel transmembrane domain	0.58	47.0	4.28e-01	95.1%	93.2%
1xd7A00	1.10.10.10	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain	0.57	45.0	4.07e-01	88.9%	88.8%
4lqkA00	1.10.437.20	Mainly Alpha › Orthogonal Bundle › Apoptosis Regulator Bcl-x › dsDNA poxvirus	0.57	42.0	3.61e-01	79.0%	51.5%
1jt6A02	1.10.357.10	Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2	0.56	48.0	4.16e-01	100.0%	88.3%
2a5yB03	1.10.8.490	Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ced-4 linker helical domain-like	0.56	32.0	3.33e-01	71.6%	59.0%
2c2jA00	1.20.1260.10	Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle	0.53	38.0	3.02e-01	74.1%	79.4%
4d3dB02	1.10.1040.10	Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2	0.53	44.0	3.82e-01	92.6%	88.4%
2k3nA00	1.10.274.60	Mainly Alpha › Orthogonal Bundle › Enzyme I; Chain A, domain 2 › Spidroin, repetitive domain	0.53	41.0	3.40e-01	87.7%	56.9%
6jitB02	1.10.1040.10	Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2	0.52	44.0	3.71e-01	92.6%	89.8%
1aluA00	1.20.1250.10	Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; ›	0.52	38.0	3.11e-01	77.8%	86.6%
6wh0A01	1.10.437.10	Mainly Alpha › Orthogonal Bundle › Apoptosis Regulator Bcl-x › Blc2-like	0.52	42.0	3.48e-01	90.1%	84.9%
4dllB02	1.10.1040.10	Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2	0.51	45.0	3.85e-01	97.5%	90.0%
4u04A02	1.10.3290.10	Mainly Alpha › Orthogonal Bundle › Fic-like fold › Fido-like domain	0.51	43.0	3.26e-01	98.8%	37.6%
1uurA03	1.10.238.10	Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand	0.51	39.0	3.89e-01	87.7%	96.6%
1vw4T01	6.10.330.20	Special › Helix non-globular › Monooxygenase ›	0.51	37.0	3.37e-01	77.8%	78.6%
3euaA02	1.10.10.2240	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A ›	0.50	35.0	3.81e-01	72.8%	90.6%
2xq9A02	1.20.58.390	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Neurotransmitter-gated ion-channel transmembrane domain	0.50	41.0	3.74e-01	97.5%	90.9%
2cvzA02	1.10.1040.10	Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2	0.50	43.0	3.69e-01	96.3%	87.1%

ECOD (18)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3055	102.6.1.1 ↗	alpha arrays › HhH/H2TH › C-terminal domain in viral ssDNA binding protein › C-terminal domain in viral ssDNA binding protein › Viral_DNA_bp	0.94	86.0	8.61e-01	100.0%	95.1%
1309095	102.6.1.1 ↗	alpha arrays › HhH/H2TH › C-terminal domain in viral ssDNA binding protein › C-terminal domain in viral ssDNA binding protein › Viral_DNA_bp	0.94	86.0	7.63e-01	100.0%	71.6%
3901054	197.1.1.1 ↗	alpha bundles › Acyl-CoA binding protein-like › Acyl-CoA binding protein-like › Acyl-CoA binding protein-like › FERM_M	0.60	53.0	4.48e-01	100.0%	76.4%
4937138	1075.5.1.1 ↗	alpha bundles › Type II ABC exporter transmembrane domain fold › Multidrug and toxic compound extrusion (MATE) transporter › Multidrug and toxic compound extrusion (MATE) transporter › MatE	0.60	48.0	3.49e-01	87.7%	61.3%
3589353	101.1.1.11 ↗	alpha arrays › HTH › HTH › Three-helical HTH › HTH_6	0.57	39.0	3.91e-01	72.8%	78.8%
3468324	109.4.1.0 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat	0.55	49.0	3.72e-01	100.0%	56.6%
5002382	3745.1.1.1 ↗	alpha bundles › Sodium/Calcium exchanger › Sodium/Calcium exchanger › Sodium/Calcium exchanger › Na_Ca_ex	0.54	44.0	3.01e-01	90.1%	58.7%
4665328	1079.1.1.13 ↗	alpha complex topology › Transmembrane reductase CcdA › Transmembrane reductase CcdA › Transmembrane reductase CcdA › Mntp	0.54	42.0	3.44e-01	85.2%	91.3%
3733754	5050.1.1.1 ↗	alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Sugar_tr	0.53	45.0	3.35e-01	93.8%	54.8%
3510901	5050.1.1.1 ↗	alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Sugar_tr	0.53	43.0	3.27e-01	90.1%	48.5%
3948394	5050.1.1.9 ↗	alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › MFS_1	0.52	39.0	3.04e-01	82.7%	88.2%
4067934	101.1.6.4 ↗	alpha arrays › HTH › HTH › TrpR › Bac_DnaA_C	0.52	41.0	4.01e-01	87.7%	90.0%
4009630	162.1.1.5 ↗	alpha bundles › PTS-regulatory domain, PRD › PTS-regulatory domain, PRD › PTS-regulatory domain, PRD › PF30457	0.52	36.0	3.40e-01	70.4%	63.0%
3725122	129.1.1.16 ↗	alpha arrays › 6-phosphogluconate dehydrogenase C-terminal domain-like › 6-phosphogluconate dehydrogenase C-terminal domain-like › 6-phosphogluconate dehydrogenase C-terminal domain-like › NAD_binding_11	0.51	44.0	3.73e-01	97.5%	83.6%
3227782	5050.1.1.1 ↗	alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Sugar_tr	0.51	44.0	3.33e-01	98.8%	64.3%
4013341	3755.4.1.3 ↗	alpha bundles › YscO-like › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain › Helo_like_N	0.51	36.0	3.16e-01	74.1%	69.6%
3595842	604.30.1.0 ↗	alpha bundles › Spectrin repeat-like › Gamma-secretase subunit PEN-2 › Gamma-secretase subunit PEN-2	0.51	36.0	3.63e-01	77.8%	75.0%
4109829	5050.1.1.0 ↗	alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter	0.50	42.0	3.30e-01	93.8%	63.7%

D2 medium residues 1-14_61-86_196-215_730-769

PDB

Domain cluster: rep: single-stranded_DNA-binding_protein__YP_009137104__Human_alphaherpesvirus_1__10298__D62-87_723-767

CATH (3)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3laxA00	3.30.300.30	Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › ANL, C-terminal domain	0.54	36.0	3.56e-01	85.0%	64.2%
5u89A01	3.30.300.30	Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › ANL, C-terminal domain	0.51	31.0	3.25e-01	86.0%	63.0%
4isbB02	3.30.300.30	Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › ANL, C-terminal domain	0.51	34.0	3.34e-01	89.0%	63.6%

ECOD (1)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4063755	327.5.1.0 ↗	a+b two layers › Alpha-lytic protease prodomain-like › a+b domain in acetyl-CoA synthetase-like proteins › a+b domain in acetyl-CoA synthetase-like proteins	0.52	34.0	2.69e-01	85.0%	29.8%

D3 medium residues 15-60_87-195_216-279

PDB

Domain cluster: rep: major_DNA_binding_protein__NP_042934__Human_betaherpesvirus_6A__32603__D1-185

Pfam (2)

Accession	Name	Score	E-value	Q cov	HMM cov
PF00747.23 best	Viral_DNA_bp	178.3	2.00e-52	79.9%	17.1%
PF00747.23	Viral_DNA_bp	32.6	2.00e-08	21.0%	4.1%

D4 medium residues 313-450_527-544_665-729_770-784

PDB

Domain cluster: rep: major_DNA_binding_protein__NP_042934__Human_betaherpesvirus_6A__32603__D217-426_621-688

Pfam (2)

Accession	Name	Score	E-value	Q cov	HMM cov
PF00747.23 best	Viral_DNA_bp	94.1	5.30e-27	59.8%	12.2%
PF00747.23	Viral_DNA_bp	32.6	1.90e-08	34.8%	6.6%

ECOD (1)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4599972	306.7.1.0 ↗	a+b two layers › Glucose permease domain IIB-like › Trigger factor ribosome-binding domain › Trigger factor ribosome-binding domain	0.59	17.0	2.42e-01	95.3%	47.0%

D5 medium residues 545-661_805-1030

PDB