UL38

Euk-Vir

Anatid_alphaherpesvirus_1

UL38__YP_003084383__Anatid_alphaherpesvirus_1__104388

Identity

72.5 mean pLDDT

Heunggongvirae› Peploviricota› Herviviricetes› Herpesvirales› Orthoherpesviridae› Mardivirus› anatid_alphaherpesvirus_1

TaxID: 104388

View cluster (32 members)

Download PDB Download Scores JSON

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 109-267

PDB

Domain cluster: rep: capsid_assembly_and_DNA_maturation_protein-like_protein__YP_010087431__Vombatid_gammaherpesvirus_1__2052651__D70-204

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF03327.20 best	Herpes_VP19C	58.5	1.10e-15	91.2%	42.2%

CATH (5)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3w0oA02	3.90.1200.10	Alpha Beta › Alpha-Beta Complex › Aminoglycoside 3'-phosphotransferase; Chain: A, domain 2 › Aminoglycoside phosphotransferase (APH), C-terminal lobe	0.60	43.0	3.82e-01	73.0%	72.4%
1nd4A02	3.90.1200.10	Alpha Beta › Alpha-Beta Complex › Aminoglycoside 3'-phosphotransferase; Chain: A, domain 2 › Aminoglycoside phosphotransferase (APH), C-terminal lobe	0.56	40.0	3.97e-01	73.0%	85.8%
1nu7D02	1.20.120.760	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Staphylcoagulase, helix bundle, domain 2	0.55	31.0	3.40e-01	83.0%	64.8%
1vquA01	1.20.970.10	Mainly Alpha › Up-down Bundle › Transferase, Pyrimidine Nucleoside Phosphorylase; Chain A, domain 3 › Transferase, Pyrimidine Nucleoside Phosphorylase; Chain C	0.52	21.0	3.10e-01	72.3%	83.6%
2i53A02	1.10.472.10	Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like	0.51	34.0	3.90e-01	79.2%	95.5%

ECOD (1)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3596992	632.7.1.0 ↗	alpha bundles › immunoglobulin/albumin-binding domain-like › Heat shock protein 70kD (HSP70), C-terminal subdomain › Heat shock protein 70kD (HSP70), C-terminal subdomain	0.52	30.0	3.59e-01	79.2%	84.8%

D2 high residues 302-384_396-464

PDB

Domain cluster: rep: capsid_triplex_subunit_1__YP_004940218__Saimiriine_betaherpesvirus_4__1535247__D166-291

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF03327.20 best	Herpes_VP19C	85.5	6.00e-24	99.3%	40.7%