UL48

Euk-Vir

Anatid_alphaherpesvirus_1

UL48__YP_003084372__Anatid_alphaherpesvirus_1__104388

Identity

70.1 mean pLDDT

Heunggongvirae› Peploviricota› Herviviricetes› Herpesvirales› Orthoherpesviridae› Mardivirus› anatid_alphaherpesvirus_1

TaxID: 104388

View cluster (32 members)

Download PDB Download Scores JSON

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 310-393_439-466

PDB

Domain cluster: rep: transactivating_tegument_protein_VP16__YP_009137200__Human_alphaherpesvirus_2__10310__D69-91_250-335

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF02232.20 best	Alpha_TIF	122.6	2.90e-35	83.0%	25.4%

CATH (2)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
16vpA00	1.10.1290.10	Mainly Alpha › Orthogonal Bundle › Conserved core of transcriptional regulatory protein vp16 › Alpha trans-inducing (Alpha-TIF)	0.79	74.0	5.14e-01	100.0%	35.0%
2pzmB00	3.40.50.720	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain	0.52	37.0	2.76e-01	75.0%	95.8%

ECOD (2)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
7584	816.1.1.1 ↗	a+b complex topology › Conserved core of transcriptional regulatory protein vp16 › Conserved core of transcriptional regulatory protein vp16 › Conserved core of transcriptional regulatory protein vp16 › Alpha_TIF	0.84	69.0	4.82e-01	87.5%	31.0%
4413839	207.1.1.187 ↗	beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_4, LRR_8, LRR_9	0.52	39.0	2.40e-01	80.4%	17.7%