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UL49.5

Euk-Vir

Anatid_alphaherpesvirus_1

UL49.5__YP_003084370__Anatid_alphaherpesvirus_1__104388

Identity

Accession:: YP_003084370 ↗
Protein ID:: UL49.5
Kingdom:: euk

Quality

65.2 mean pLDDT

Taxonomy

Heunggongvirae› Peploviricota› Herviviricetes› Herpesvirales› Orthoherpesviridae› Mardivirus› anatid_alphaherpesvirus_1

TaxID: 104388

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 13-36_57-93

PDB

Domain cluster: representative

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF05702.18 best	Herpes_UL49_5	47.6	1.90e-12	67.2%	46.2%

CATH (18)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
1lrzA03	1.20.58.90	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 ›	0.77	57.0	5.76e-01	91.8%	77.4%
1vq8V00	1.10.287.310	Mainly Alpha › Orthogonal Bundle › Helix Hairpins ›	0.75	46.0	4.53e-01	72.1%	58.5%
3b2eF00	1.10.287.660	Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin	0.72	55.0	5.53e-01	98.4%	80.6%
4ioeA00	1.10.287.850	Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HP0062-like domain	0.70	60.0	5.33e-01	93.4%	83.9%
2bdeA03	1.20.58.1160	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 ›	0.70	51.0	4.71e-01	91.8%	61.0%
1b3qA01	1.10.287.560	Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Histidine kinase CheA-like, homodimeric domain	0.70	49.0	4.93e-01	80.3%	72.6%
4b6xA00	1.20.58.90	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 ›	0.69	55.0	5.33e-01	91.8%	76.8%
4dylA02	1.10.287.160	Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HR1 repeat	0.68	57.0	4.94e-01	91.8%	59.6%
1a36A04	1.10.132.10	Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 ›	0.68	60.0	4.26e-01	96.7%	36.0%
1skvA00	1.10.287.660	Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin	0.68	50.0	4.95e-01	98.4%	75.0%
4gzrB00	1.10.287.1060	Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like	0.68	59.0	5.44e-01	96.7%	80.5%
6tkvA01	1.10.287.1060	Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like	0.67	54.0	5.28e-01	91.8%	80.9%
3txsC01	1.10.287.1060	Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like	0.67	55.0	5.20e-01	100.0%	76.0%
6h9xA01	1.10.287.40	Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Serine-tRNA synthetase, tRNA binding domain	0.66	52.0	4.44e-01	86.9%	54.9%
3r84A00	1.10.287.3490	Mainly Alpha › Orthogonal Bundle › Helix Hairpins ›	0.66	58.0	5.27e-01	96.7%	77.8%
1ydxA02	1.10.287.1120	Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Bipartite methylase S protein	0.64	58.0	5.04e-01	100.0%	67.8%
1z0jB00	4.10.860.20	Few Secondary Structures › Irregular › DNA Excision Repair, Uvrb; Chain A › Rabenosyn, Rab binding domain	0.62	45.0	4.86e-01	78.7%	90.2%
2lf0A01	4.10.860.10	Few Secondary Structures › Irregular › DNA Excision Repair, Uvrb; Chain A › UVR domain	0.57	47.0	4.83e-01	90.2%	91.7%

ECOD (3)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4034278	5043.1.1.0 ↗	extended segments › Sensor proteins transmembrane domains › Htr2 transmembrane domain-like › Htr2 transmembrane domain-like	0.85	63.0	6.44e-01	80.3%	100.0%
4831662	5043.1.1.1 ↗	extended segments › Sensor proteins transmembrane domains › Htr2 transmembrane domain-like › Htr2 transmembrane domain-like › Htr2	0.79	63.0	6.14e-01	91.8%	80.3%
437078	3713.1.1.1 ↗	alpha bundles › Small terminase central domain › Small terminase central domain › Small terminase central domain › DNA_Packaging	0.67	55.0	4.88e-01	100.0%	62.6%