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UL6

Euk-Vir

Vombatid_gammaherpesvirus_1

UL6__YP_010087410__Vombatid_gammaherpesvirus_1__2052651

Identity

Accession:: YP_010087410 ↗
Protein ID:: UL6
Kingdom:: euk

Quality

76.0 mean pLDDT

Taxonomy

Heunggongvirae› Peploviricota› Herviviricetes› Herpesvirales› Orthoherpesviridae› Manticavirus› Vombatid_gammaherpesvirus_1

TaxID: 2052651

Cluster

View cluster (76 members)

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 6-58_123-145_191-229_492-523

PDB

Domain cluster: rep: JM72__YP_238375__Macaca_fuscata_rhadinovirus__272551__D50-239

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF01763.23 best	Herpes_UL6	48.8	5.40e-13	29.9%	7.7%

CATH (3)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
6my0A02	2.30.30.30	Mainly Beta › Roll › SH3 type barrels. ›	0.59	22.0	3.11e-01	72.1%	70.8%
4x9cD00	2.30.30.100	Mainly Beta › Roll › SH3 type barrels. ›	0.55	19.0	2.88e-01	84.4%	71.7%
7afrX02	2.30.30.180	Mainly Beta › Roll › SH3 type barrels. › Ribosome maturation factor RimP, C-terminal domain	0.54	20.0	3.00e-01	84.4%	78.3%

ECOD (6)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4944418	331.1.1.0 ↗	a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like	0.73	19.0	2.79e-01	72.8%	46.7%
4937221	331.1.1.0 ↗	a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like	0.71	18.0	2.63e-01	72.1%	44.0%
3305577	4.1.1.175 ↗	beta barrels › SH3 › SH3 › SH3 › MSSS	0.59	20.0	3.17e-01	72.8%	78.2%
4575824	2.8.1.2 ↗	beta barrels › OB-fold › mu transposases-C › mu transposases-C › Mu-transpos_C_2	0.56	28.0	3.86e-01	87.8%	100.0%
4476045	4.1.1.97 ↗	beta barrels › SH3 › SH3 › SH3 › DUF150_C	0.53	21.0	2.93e-01	85.0%	72.9%
3929290	614.1.1.0 ↗	alpha duplicates or obligate multimers › L27 domain › L27 domain › L27 domain	0.51	19.0	2.76e-01	86.4%	70.0%

D2 medium residues 59-122_524-553

PDB

Domain cluster: representative

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF01763.23 best	Herpes_UL6	42.5	4.30e-11	69.2%	11.9%

CATH (19)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4an8A02	1.10.132.100	Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 ›	0.71	49.0	4.43e-01	70.2%	54.1%
4hehA01	1.10.1240.10	Mainly Alpha › Orthogonal Bundle › Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 › Methionine synthase domain	0.68	47.0	4.99e-01	100.0%	81.9%
4lwsA00	1.10.287.1060	Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like	0.62	41.0	4.01e-01	70.2%	62.0%
2wdqC00	1.20.1300.10	Mainly Alpha › Up-down Bundle › 3 helical TM bundles of succinate and fumarate reductases › Fumarate reductase/succinate dehydrogenase, transmembrane subunit	0.61	45.0	4.23e-01	79.8%	72.7%
3qo8A01	1.10.287.40	Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Serine-tRNA synthetase, tRNA binding domain	0.61	41.0	4.00e-01	70.2%	72.6%
1kmiZ02	1.10.287.500	Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin	0.60	41.0	3.65e-01	70.2%	80.6%
4mh6A00	1.10.287.1700	Mainly Alpha › Orthogonal Bundle › Helix Hairpins ›	0.60	41.0	3.43e-01	70.2%	76.7%
6vudA01	1.10.132.20	Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Ribosome-recycling factor	0.60	53.0	5.10e-01	100.0%	93.6%
4ioeA00	1.10.287.850	Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HP0062-like domain	0.58	38.0	3.95e-01	71.3%	71.3%
2wzkA03	1.20.1310.10	Mainly Alpha › Up-down Bundle › 5 helical Cullin repeat like › Cullin Repeats	0.57	45.0	4.29e-01	90.4%	70.9%
1wleA01	1.10.287.40	Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Serine-tRNA synthetase, tRNA binding domain	0.57	41.0	3.82e-01	73.4%	88.6%
2xubA05	6.10.140.1450	Special › Helix non-globular › Helix Hairpins ›	0.55	37.0	3.76e-01	70.2%	92.7%
1sz7A00	3.30.1380.20	Alpha Beta › 2-Layer Sandwich › Muramoyl-pentapeptide Carboxypeptidase; domain 2 › Trafficking protein particle complex subunit 3	0.55	46.0	4.00e-01	97.9%	69.2%
2lwdA00	1.10.533.10	Mainly Alpha › Orthogonal Bundle › Death Domain, Fas › Death Domain, Fas	0.54	28.0	2.86e-01	96.8%	45.8%
2l1lB00	1.20.1440.250	Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) ›	0.54	35.0	3.15e-01	100.0%	48.0%
6v9zA02	1.20.1560.10	Mainly Alpha › Up-down Bundle › ABC transporter transmembrane region fold › ABC transporter type 1, transmembrane domain	0.54	47.0	3.31e-01	100.0%	44.3%
3kb9A00	1.10.600.10	Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase	0.53	45.0	3.15e-01	95.7%	28.5%
2np5D00	1.10.357.10	Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2	0.52	40.0	3.38e-01	90.4%	48.7%
2vxgA02	1.10.220.100	Mainly Alpha › Orthogonal Bundle › Annexin V; domain 1 › conserved c-terminal region of ge- 1	0.51	34.0	3.57e-01	100.0%	77.6%

ECOD (12)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4142324	109.4.1.228 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Exo84_C	0.66	50.0	3.67e-01	92.6%	30.4%
3604077	601.14.1.1 ↗	alpha bundles › Four-helical up-and-down bundle › Hemerythrin › Hemerythrin › Hemerythrin	0.63	49.0	4.28e-01	87.2%	55.0%
3880841	5086.1.1.0 ↗	alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins	0.62	42.0	3.36e-01	70.2%	48.9%
2617308	1075.4.1.1 ↗	alpha bundles › Type II ABC exporter transmembrane domain fold › Type I ABC exporter transmembrane domain fold › Type I ABC exporter transmembrane domain fold › ABC_membrane	0.60	54.0	3.60e-01	98.9%	50.4%
5060432	5086.1.1.0 ↗	alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins	0.59	40.0	3.58e-01	70.2%	56.2%
4001533	1075.4.1.1 ↗	alpha bundles › Type II ABC exporter transmembrane domain fold › Type I ABC exporter transmembrane domain fold › Type I ABC exporter transmembrane domain fold › ABC_membrane	0.57	49.0	3.71e-01	94.7%	60.4%
4944676	632.22.1.0 ↗	alpha bundles › immunoglobulin/albumin-binding domain-like › Cell division protein EzrA repeats › Cell division protein EzrA repeats	0.57	39.0	3.65e-01	70.2%	73.9%
3939162	604.1.1.0 ↗	alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat	0.54	44.0	4.10e-01	90.4%	70.0%
3986281	2004.1.1.514 ↗	a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_23, AAA_29, SbcC_Walker_B	0.53	43.0	2.80e-01	89.4%	41.5%
3855782	604.1.1.92 ↗	alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › SR_desmoplakin_3	0.52	43.0	4.03e-01	90.4%	80.8%
3934928	604.1.1.0 ↗	alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat	0.51	40.0	4.08e-01	87.2%	85.3%
3663661	604.12.1.90 ↗	alpha bundles › Spectrin repeat-like › MIT domain › MIT domain › NatA_aux_su	0.50	40.0	3.81e-01	88.3%	73.0%

D3 medium residues 230-311_451-491

PDB

Domain cluster: rep: ORF43__YP_009173919__Felis_catus_gammaherpesvirus_1__1452540__D36-48_240-270_456-502

Pfam (2)

Accession	Name	Score	E-value	Q cov	HMM cov
PF01763.23 best	Herpes_UL6	107.4	9.80e-31	66.7%	14.6%
PF01763.23	Herpes_UL6	54.6	9.30e-15	35.0%	7.7%