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Ubiquitin_domain_containing_protein

Euk-Vir

Pandoravirus_quercus

Ubiquitin_domain_containing_protein__YP_009483377__Pandoravirus_quercus__2107709

Identity

Accession:: YP_009483377 ↗
Protein ID:: Ubiquitin_domain_containing_protein
Kingdom:: euk

Quality

70.8 mean pLDDT

Cluster

View cluster (20 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 21-153

PDB

Domain cluster: rep: ubiquitin_domain-containing_protein__YP_009119676__Pandoravirus_inopinatum__1605721__D47-170

CATH (2)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3fb9B00	2.30.30.100	Mainly Beta › Roll › SH3 type barrels. ›	0.71	32.0	4.03e-01	80.5%	69.0%
6gbuD00	2.30.30.40	Mainly Beta › Roll › SH3 type barrels. › SH3 Domains	0.59	28.0	4.02e-01	80.5%	95.3%

ECOD (14)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3370810	376.1.1.22 ↗	few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4_3	0.89	35.0	5.75e-01	72.9%	94.5%
3540501	376.1.1.22 ↗	few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4_3	0.84	36.0	5.50e-01	76.7%	93.3%
3594564	376.1.1.0 ↗	few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box	0.83	36.0	5.08e-01	77.4%	81.4%
3529537	376.1.1.22 ↗	few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4_3	0.80	37.0	5.30e-01	75.2%	92.3%
4252085	376.1.1.1 ↗	few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4	0.73	30.0	4.65e-01	71.4%	100.0%
3587906	4.1.1.46 ↗	beta barrels › SH3 › SH3 › SH3 › VEG	0.63	31.0	3.94e-01	81.2%	77.5%
3482680	4.1.1.0 ↗	beta barrels › SH3 › SH3 › SH3	0.63	30.0	4.27e-01	80.5%	95.4%
4218488	4.1.1.54 ↗	beta barrels › SH3 › SH3 › SH3 › SH3_2	0.61	30.0	3.88e-01	87.2%	80.0%
3217772	4.1.1.0 ↗	beta barrels › SH3 › SH3 › SH3	0.59	34.0	4.18e-01	81.2%	88.2%
3238035	386.1.1.0 ↗	few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers	0.59	25.0	3.73e-01	92.5%	100.0%
4036940	218.1.1.8 ↗	a+b two layers › Enolase-N/ribosomal protein › Enolase N-terminal domain-like › Enolase N-terminal domain-like › HrcA	0.52	26.0	3.01e-01	72.9%	64.2%
3255173	220.1.1.58 ↗	beta barrels › PH domain-like › PH domain-like › PH domain-like › PH-GRAM_MTMR6-like	0.52	31.0	3.29e-01	82.0%	67.8%
3708283	4.1.1.0 ↗	beta barrels › SH3 › SH3 › SH3	0.51	28.0	3.42e-01	78.2%	83.5%
3929563	5.1.4.14 ↗	beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Peptidase_S9_N	0.50	38.0	2.89e-01	82.7%	64.9%

D2 high residues 169-239

PDB

Domain cluster: rep: IMGVR_UViG_3300021400_004370-3300021400-Ga0224422_126570053__D12-86

Pfam (2)

Accession	Name	Score	E-value	Q cov	HMM cov
PF11976.15 best	Rad60-SLD	25.0	1.80e-05	100.0%	100.0%
PF00240.30	ubiquitin	55.5	5.60e-15	97.2%	95.8%