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Uracil-DNA_glycosylase

Euk-Vir

Pandoravirus_neocaledonia

Uracil-DNA_glycosylase__YP_009482456__Pandoravirus_neocaledonia__2107708

Identity

Accession:
YP_009482456 ↗
Protein ID:
Uracil-DNA_glycosylase
Kingdom:
euk

Quality

79.2 mean pLDDT

Cluster

View cluster (6 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 61-303
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF03167.26 best UDG 60.0 3.90e-16 69.1% 97.9%
CATH (12)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2booA00 3.40.470.10 Alpha Beta › 3-Layer(aba) Sandwich › Uracil-DNA Glycosylase, subunit E › Uracil-DNA glycosylase-like domain 0.96 84.0 8.66e-01 98.4% 93.5%
2c53A00 3.40.470.10 Alpha Beta › 3-Layer(aba) Sandwich › Uracil-DNA Glycosylase, subunit E › Uracil-DNA glycosylase-like domain 0.94 83.0 8.59e-01 100.0% 96.1%
6lydA01 3.40.470.10 Alpha Beta › 3-Layer(aba) Sandwich › Uracil-DNA Glycosylase, subunit E › Uracil-DNA glycosylase-like domain 0.87 84.0 8.39e-01 99.6% 97.6%
2l3fA00 3.40.470.10 Alpha Beta › 3-Layer(aba) Sandwich › Uracil-DNA Glycosylase, subunit E › Uracil-DNA glycosylase-like domain 0.70 47.0 5.58e-01 82.3% 100.0%
4qdiA03 3.90.190.20 Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Mur ligase, C-terminal domain 0.62 28.0 3.61e-01 81.5% 69.9%
5ybwA02 3.40.50.1100 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.60 25.0 3.85e-01 95.5% 93.9%
5cvcA02 3.40.50.1100 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.58 25.0 3.74e-01 95.5% 93.8%
5c3uA02 3.40.50.1100 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.57 25.0 3.67e-01 95.5% 94.8%
5d84A02 3.40.50.1100 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.56 27.0 3.80e-01 92.6% 95.5%
1y7lA02 3.40.50.1100 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.55 24.0 3.52e-01 96.3% 93.2%
4d9gA02 3.40.50.1100 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.50 25.0 3.40e-01 95.5% 92.4%
3c85A00 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.50 28.0 3.56e-01 88.5% 88.7%
ECOD (18)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3837322 7569.1.1.1 ↗ a/b three-layered sandwiches › Uracil-DNA glycosylase-like › Uracil-DNA glycosylase-like › Uracil-DNA glycosylase-like › UDG 0.96 86.0 8.34e-01 98.8% 84.6%
3592251 7569.1.1.0 ↗ a/b three-layered sandwiches › Uracil-DNA glycosylase-like › Uracil-DNA glycosylase-like › Uracil-DNA glycosylase-like 0.94 84.0 8.64e-01 98.4% 94.9%
4168074 7569.1.1.1 ↗ a/b three-layered sandwiches › Uracil-DNA glycosylase-like › Uracil-DNA glycosylase-like › Uracil-DNA glycosylase-like › UDG 0.93 82.0 8.35e-01 99.6% 91.3%
3171107 7569.1.1.1 ↗ a/b three-layered sandwiches › Uracil-DNA glycosylase-like › Uracil-DNA glycosylase-like › Uracil-DNA glycosylase-like › UDG 0.89 86.0 8.15e-01 100.0% 86.8%
4149039 7569.1.1.1 ↗ a/b three-layered sandwiches › Uracil-DNA glycosylase-like › Uracil-DNA glycosylase-like › Uracil-DNA glycosylase-like › UDG 0.87 78.0 8.02e-01 98.4% 96.1%
2100092 7569.1.1.1 ↗ a/b three-layered sandwiches › Uracil-DNA glycosylase-like › Uracil-DNA glycosylase-like › Uracil-DNA glycosylase-like › UDG 0.86 84.0 7.96e-01 99.6% 87.3%
4499054 7569.1.1.1 ↗ a/b three-layered sandwiches › Uracil-DNA glycosylase-like › Uracil-DNA glycosylase-like › Uracil-DNA glycosylase-like › UDG 0.85 75.0 7.75e-01 98.4% 95.7%
4621405 7569.1.1.1 ↗ a/b three-layered sandwiches › Uracil-DNA glycosylase-like › Uracil-DNA glycosylase-like › Uracil-DNA glycosylase-like › UDG 0.85 81.0 8.10e-01 99.2% 96.7%
3273876 7569.1.1.0 ↗ a/b three-layered sandwiches › Uracil-DNA glycosylase-like › Uracil-DNA glycosylase-like › Uracil-DNA glycosylase-like 0.76 72.0 7.18e-01 97.9% 96.7%
2129698 7569.1.1.1 ↗ a/b three-layered sandwiches › Uracil-DNA glycosylase-like › Uracil-DNA glycosylase-like › Uracil-DNA glycosylase-like › UDG 0.72 68.0 6.77e-01 98.4% 97.2%
5023939 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.58 27.0 3.91e-01 74.5% 95.5%
4954171 2003.1.1.5 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › ADH_zinc_N 0.57 24.0 3.60e-01 88.5% 89.3%
5010456 2003.4.1.1 ↗ a/b three-layered sandwiches › Rossmann-like › Tryptophan synthase beta subunit-like PLP-dependent enzymes › Tryptophan synthase beta subunit-like PLP-dependent enzymes › PALP 0.54 30.0 3.81e-01 100.0% 89.7%
3254521 2003.4.1.1 ↗ a/b three-layered sandwiches › Rossmann-like › Tryptophan synthase beta subunit-like PLP-dependent enzymes › Tryptophan synthase beta subunit-like PLP-dependent enzymes › PALP 0.54 27.0 3.57e-01 95.1% 86.9%
4347920 2003.1.1.33 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › DXP_reductoisom 0.53 29.0 3.52e-01 72.4% 80.0%
3693442 2003.4.1.1 ↗ a/b three-layered sandwiches › Rossmann-like › Tryptophan synthase beta subunit-like PLP-dependent enzymes › Tryptophan synthase beta subunit-like PLP-dependent enzymes › PALP 0.53 28.0 3.50e-01 95.1% 82.1%
4926974 2003.4.1.1 ↗ a/b three-layered sandwiches › Rossmann-like › Tryptophan synthase beta subunit-like PLP-dependent enzymes › Tryptophan synthase beta subunit-like PLP-dependent enzymes › PALP 0.53 28.0 3.59e-01 95.1% 88.9%
3793679 2003.4.1.1 ↗ a/b three-layered sandwiches › Rossmann-like › Tryptophan synthase beta subunit-like PLP-dependent enzymes › Tryptophan synthase beta subunit-like PLP-dependent enzymes › PALP 0.52 30.0 3.49e-01 95.1% 76.0%