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V10

Euk-Vir

Sputnik_virophage

V10__YP_002122371__Sputnik_virophage__543939

Identity

Accession:
YP_002122371 ↗
Protein ID:
V10
Kingdom:
euk

Quality

73.3 mean pLDDT

Taxonomy

Bamfordvirae› Preplasmiviricota› Virophaviricetes› Mividavirales› Sputniviroviridae› Sputnikvirus› Sputnik_virophage

TaxID: 543939

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 27-189
PDB
Domain cluster: rep: IMGVR_UViG_3300033892_000026-3300033892-Ga0326767_000352_8_745__D58-209
CATH (12)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3uxuA00 1.10.443.10 Mainly Alpha › Orthogonal Bundle › hpI Integrase; Chain A › Intergrase catalytic core 0.75 51.0 5.23e-01 100.0% 71.1%
8b9zK01 1.10.287.3510 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.68 32.0 4.19e-01 77.9% 79.1%
4hojA02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.67 35.0 4.30e-01 82.8% 79.6%
1orsC00 1.20.120.350 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Voltage-gated potassium channels. Chain C 0.63 32.0 3.60e-01 74.2% 60.6%
1f2eA02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.63 32.0 3.98e-01 74.8% 77.4%
2pvqA02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.60 33.0 3.94e-01 81.0% 79.2%
7bqiA01 1.20.58.900 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › RUN domain 0.56 39.0 4.02e-01 70.6% 99.3%
1upkA01 1.25.10.10 Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant 0.55 30.0 2.46e-01 81.0% 26.8%
3behB01 1.20.120.540 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Voltage-gated potassium channels 0.53 33.0 3.92e-01 96.3% 87.2%
2chnB03 1.20.58.460 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Hyaluronidase post-catalytic domain-like 0.53 37.0 3.58e-01 100.0% 63.9%
1e9rA02 1.10.8.80 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Magnesium chelatase subunit I, C-Terminal domain 0.52 35.0 4.03e-01 91.4% 96.5%
1bd3A00 3.40.50.2020 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.50 36.0 3.27e-01 73.6% 90.6%
ECOD (20)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3604531 605.1.1.0 ↗ alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase 0.98 30.0 3.45e-01 94.5% 40.0%
5013304 101.1.8.0 ↗ alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes 0.90 59.0 7.23e-01 89.0% 98.2%
3549899 109.4.1.106 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › CPL 0.72 33.0 2.26e-01 77.9% 13.0%
3226696 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.71 34.0 3.26e-01 81.0% 39.5%
3215718 5069.1.3.0 ↗ alpha bundles › Transmembrane heme-binding four-helical bundle › Transmembrane heme-binding four-helical bundle › Fumarate reductase respiratory complex transmembrane subunits 0.66 33.0 4.75e-01 77.3% 100.0%
4180367 101.1.8.1 ↗ alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.66 57.0 5.68e-01 90.8% 91.5%
3737877 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.65 32.0 3.24e-01 89.0% 46.1%
3587560 633.2.1.1 ↗ alpha bundles › Bromodomain-like › Carnobacteriocin B2 immunity protein › Carnobacteriocin B2 immunity protein › EntA_Immun 0.65 34.0 3.98e-01 87.7% 69.6%
5004013 601.7.1.69 ↗ alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain › AAA_13 0.65 33.0 3.74e-01 77.9% 62.4%
3704193 4177.1.1.0 ↗ alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like 0.64 29.0 2.52e-01 100.0% 27.8%
3942380 101.1.8.0 ↗ alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes 0.60 51.0 5.07e-01 92.0% 87.5%
3740042 109.4.1.1298 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Fes1, PF28415 0.56 31.0 2.57e-01 90.2% 29.8%
5049932 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.56 37.0 4.00e-01 96.9% 78.6%
4360469 132.1.1.1 ↗ alpha bundles › ACP-like › Acyl-carrier protein (ACP) › Acyl-carrier protein (ACP) › PP-binding 0.55 35.0 4.11e-01 73.6% 92.7%
3622344 109.4.1.88 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › MUN 0.55 37.0 3.40e-01 98.8% 50.5%
3500232 109.4.1.1242 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › HEAT_RRP12_N 0.55 32.0 2.47e-01 95.1% 25.4%
4592663 3978.1.1.1 ↗ alpha complex topology › Integral membrane Acyl-CoA desaturase › Integral membrane Acyl-CoA desaturase › Integral membrane Acyl-CoA desaturase › FA_desaturase 0.53 47.0 3.71e-01 96.3% 80.9%
None — 0.52 38.0 2.71e-01 73.6% 77.1%
3253123 3978.1.1.1 ↗ alpha complex topology › Integral membrane Acyl-CoA desaturase › Integral membrane Acyl-CoA desaturase › Integral membrane Acyl-CoA desaturase › FA_desaturase 0.51 45.0 3.70e-01 98.2% 81.5%
4827615 323.1.1.5 ↗ a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › Condensation 0.51 27.0 2.93e-01 72.4% 59.7%