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V2
Euk-VirSputnik_virophage
V2__YP_002122363__Sputnik_virophage__543939
Identity
- Accession:
- YP_002122363 ↗
- Protein ID:
- V2
- Kingdom:
- euk
Quality
78.2
mean pLDDT
Taxonomy
Bamfordvirae›
Preplasmiviricota›
Virophaviricetes›
Mividavirales›
Sputniviroviridae›
Sputnikvirus›
Sputnik_virophage
TaxID: 543939
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 4-29_49-113
Domain cluster:
representative
CATH (13)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3h3aA04 | 1.10.246.80 | Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › | 0.72 | 30.0 | 3.96e-01 | 74.7% | 70.0% |
| 3umgA02 | 1.10.150.240 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 | 0.68 | 41.0 | 4.56e-01 | 100.0% | 76.1% |
| 1fnnB03 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.58 | 36.0 | 3.46e-01 | 92.3% | 53.4% |
| 3umbA02 | 1.10.150.240 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 | 0.57 | 45.0 | 4.81e-01 | 94.5% | 94.9% |
| 2hoqA02 | 1.10.150.520 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › | 0.57 | 42.0 | 4.46e-01 | 78.0% | 100.0% |
| 1nv8B01 | 1.10.8.10 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain | 0.56 | 34.0 | 3.71e-01 | 74.7% | 76.1% |
| 4gxzD00 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.55 | 38.0 | 3.21e-01 | 73.6% | 47.1% |
| 3gkeA02 | 3.90.380.10 | Alpha Beta › Alpha-Beta Complex › Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1 › Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1 | 0.55 | 41.0 | 3.16e-01 | 79.1% | 78.1% |
| 1n81A00 | 1.10.3030.10 | Mainly Alpha › Orthogonal Bundle › Gametocyte protein Pfg27 › Gametocyte protein Pfg27 | 0.55 | 43.0 | 3.37e-01 | 92.3% | 40.9% |
| 1wncB00 | 1.20.5.300 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › | 0.53 | 34.0 | 3.67e-01 | 94.5% | 74.1% |
| 2zb4A02 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.51 | 35.0 | 2.91e-01 | 72.5% | 97.8% |
| 3wvoC02 | 1.10.132.100 | Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › | 0.51 | 42.0 | 3.77e-01 | 92.3% | 94.6% |
| 8alzB08 | 1.10.3380.10 | Mainly Alpha › Orthogonal Bundle › Sec63 N-terminal domain-like fold › Sec63 N-terminal domain-like domain | 0.50 | 40.0 | 3.66e-01 | 91.2% | 81.7% |
ECOD (14)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3464617 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.70 | 33.0 | 4.00e-01 | 78.0% | 66.7% |
| 3453546 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.68 | 34.0 | 3.95e-01 | 80.2% | 66.2% |
| 3236724 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.68 | 42.0 | 4.06e-01 | 92.3% | 54.3% |
| 3352882 | 101.7.1.1 ↗ | alpha arrays › HTH › DEK-C › DEK-C › DEK_C | 0.67 | 37.0 | 4.21e-01 | 92.3% | 71.4% |
| 3748471 | 4953.1.1.33 ↗ | beta barrels › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like › PF31020 | 0.65 | 46.0 | 4.23e-01 | 93.4% | 56.7% |
| 3585015 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.65 | 38.0 | 3.78e-01 | 91.2% | 54.7% |
| 3795754 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.65 | 38.0 | 3.70e-01 | 91.2% | 52.0% |
| 3685074 | 101.7.1.1 ↗ | alpha arrays › HTH › DEK-C › DEK-C › DEK_C | 0.64 | 35.0 | 4.21e-01 | 94.5% | 81.7% |
| 4025261 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.61 | 35.0 | 3.37e-01 | 92.3% | 46.4% |
| 3255248 | 101.35.1.0 ↗ | alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX | 0.60 | 33.0 | 3.63e-01 | 90.1% | 67.1% |
| 4018084 | 605.1.1.0 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase | 0.55 | 39.0 | 4.35e-01 | 80.2% | 94.3% |
| 3529255 | 1067.1.1.1 ↗ | few secondary structure elements › pheromone Ep-1 › pheromone Ep-1 › pheromone Ep-1 › DUF4536 | 0.53 | 33.0 | 3.93e-01 | 79.1% | 95.0% |
| 4952304 | 3896.1.1.0 ↗ | alpha duplicates or obligate multimers › Intramembrane CDP-DAG synthetase-related › Intramembrane CDP-DAG synthetase-related › Intramembrane CDP-DAG synthetase | 0.52 | 43.0 | 3.31e-01 | 92.3% | 51.2% |
| 5022256 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.50 | 30.0 | 3.08e-01 | 89.0% | 61.1% |