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VETF-L

Euk-Vir

Western_grey_kangaroopox_virus

VETF-L__YP_010085233__Western_grey_kangaroopox_virus__1566307

Identity

Accession:
YP_010085233 ↗
Protein ID:
VETF-L
Kingdom:
euk

Quality

86.7 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 7-167
PDB
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF04441.20 best Pox_VERT_large 264.3 3.30e-78 100.0% 22.4%
D2 high residues 179-269
PDB
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF04441.20 best Pox_VERT_large 116.2 2.10e-33 100.0% 13.5%
D3 high residues 275-351
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF04441.20 best Pox_VERT_large 138.4 3.90e-40 100.0% 10.9%
CATH (37)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2jhnA01 3.30.310.20 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › DNA-3-methyladenine glycosylase AlkA, N-terminal domain 0.71 64.0 5.61e-01 98.7% 95.6%
1xmtA00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.70 48.0 4.56e-01 72.7% 66.3%
1qnaA01 3.30.310.10 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › TATA-Binding Protein 0.70 62.0 5.83e-01 98.7% 84.9%
4z9mB02 3.30.590.10 Alpha Beta › 2-Layer Sandwich › Creatine Kinase; Chain A, domain 2 › Glutamine synthetase/guanido kinase, catalytic domain 0.67 59.0 4.40e-01 100.0% 69.7%
4tpsA00 3.30.310.250 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Sporulation inhibitor of replication protein SirA 0.65 53.0 4.38e-01 90.9% 84.3%
2joiA00 3.30.310.190 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › 0.64 52.0 4.86e-01 89.6% 85.4%
5jeaD00 3.30.230.70 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › GHMP Kinase, N-terminal domain 0.64 48.0 3.51e-01 81.8% 92.9%
1cqaA00 3.30.450.30 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Dynein light chain 2a, cytoplasmic 0.64 43.0 3.73e-01 70.1% 69.1%
2jpiA00 3.30.310.50 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Alpha-D-phosphohexomutase, C-terminal domain 0.63 54.0 5.08e-01 98.7% 83.3%
6v04A01 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.63 53.0 4.67e-01 100.0% 97.6%
3ei3B02 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.63 42.0 2.82e-01 70.1% 100.0%
8es5A01 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.61 52.0 4.41e-01 100.0% 92.8%
2gmlA02 3.30.70.1560 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Alpha-L RNA-binding motif 0.60 45.0 4.58e-01 90.9% 83.8%
3f0zA01 3.30.310.260 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › 0.60 53.0 4.70e-01 100.0% 83.9%
1dl5A02 3.55.20.10 Alpha Beta › 3-Layer(bab) Sandwich › Protein-l-isoaspartate O-methyltransferase; Chain: A, domain 2 › Protein-L-isoaspartyl O-methyltransferase, C-terminal domain 0.60 50.0 4.40e-01 100.0% 62.1%
5b4wA00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.60 41.0 2.57e-01 71.4% 100.0%
6qp7A01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.59 41.0 2.52e-01 71.4% 97.5%
3f42A00 3.30.1310.10 Alpha Beta › 2-Layer Sandwich › Ybab; Chain: A; › Nucleoid-associated protein YbaB-like domain 0.59 44.0 4.16e-01 88.3% 66.7%
2eenA00 2.40.320.10 Mainly Beta › Beta Barrel › Hypothetical Protein Pfu-838710-001 › Hypothetical Protein Pfu-838710-001 0.56 45.0 3.59e-01 93.5% 89.8%
1genA00 2.110.10.10 Mainly Beta › 4 Propeller › Hemopexin › Hemopexin-like domain 0.56 42.0 3.16e-01 81.8% 94.5%
5mmiG01 3.90.930.12 Alpha Beta › Alpha-Beta Complex › Outer Surface Protein A; domain 3 › Ribosomal protein L6 0.55 48.0 4.75e-01 100.0% 100.0%
2hiyA01 3.30.70.1280 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › SP0830-like domains 0.55 42.0 4.12e-01 94.8% 75.0%
1vx7X00 3.30.1360.210 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › 0.55 47.0 4.44e-01 100.0% 78.4%
1yprA00 3.30.450.30 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Dynein light chain 2a, cytoplasmic 0.54 41.0 3.53e-01 81.8% 98.4%
1ewqA04 1.10.1420.10 Mainly Alpha › Orthogonal Bundle › MutS, DNA mismatch repair protein; Chain A, domain 3 › 0.54 41.0 3.49e-01 83.1% 56.6%
4mt4A00 1.20.1600.10 Mainly Alpha › Up-down Bundle › Outer membrane efflux proteins (OEP) › Outer membrane efflux proteins (OEP) 0.54 35.0 2.16e-01 87.0% 11.0%
3nycA02 3.30.9.10 Alpha Beta › 2-Layer Sandwich › D-Amino Acid Oxidase; Chain A, domain 2 › D-Amino Acid Oxidase, subunit A, domain 2 0.53 42.0 3.44e-01 89.6% 45.3%
3ttcA03 3.30.420.360 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › 0.53 46.0 4.03e-01 98.7% 94.2%
1vq8E01 3.90.930.12 Alpha Beta › Alpha-Beta Complex › Outer Surface Protein A; domain 3 › Ribosomal protein L6 0.53 45.0 4.55e-01 100.0% 98.7%
3fqmA01 2.20.25.210 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › Hepatitis C NS5A, domain 1B 0.53 38.0 4.12e-01 92.2% 95.1%
5gaeG01 3.90.930.12 Alpha Beta › Alpha-Beta Complex › Outer Surface Protein A; domain 3 › Ribosomal protein L6 0.53 46.0 4.53e-01 100.0% 96.3%
4nswA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.53 39.0 3.54e-01 80.5% 93.6%
3zh5A00 2.40.128.710 Mainly Beta › Beta Barrel › Lipocalin › Surface-adhesin protein E 0.52 39.0 3.37e-01 83.1% 84.8%
4qwoB00 3.30.450.30 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Dynein light chain 2a, cytoplasmic 0.52 39.0 3.37e-01 83.1% 98.5%
4gq1A00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.52 40.0 2.62e-01 83.1% 89.9%
2kl8A00 3.30.70.600 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S10 0.51 40.0 3.96e-01 98.7% 81.2%
1xkiA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.51 42.0 3.60e-01 93.5% 85.2%
ECOD (63)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5014721 331.1.1.0 a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like 0.75 66.0 6.11e-01 94.8% 84.2%
4985393 331.1.1.0 a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like 0.75 61.0 6.25e-01 89.6% 97.3%
4947558 331.1.1.0 a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like 0.73 65.0 6.17e-01 97.4% 85.6%
4985658 331.1.1.0 a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like 0.73 66.0 6.44e-01 100.0% 91.8%
5051705 331.1.1.1 a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like › TBP 0.73 66.0 6.12e-01 98.7% 83.2%
4984104 331.1.1.0 a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like 0.73 66.0 5.67e-01 100.0% 65.8%
5067909 331.1.1.0 a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like 0.72 64.0 6.22e-01 98.7% 95.3%
4982639 331.1.1.0 a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like 0.71 65.0 5.62e-01 100.0% 68.7%
3178343 304.48.1.37 a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RVT_2 0.70 57.0 3.91e-01 88.3% 39.3%
5048326 331.1.1.0 a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like 0.70 62.0 5.44e-01 98.7% 79.1%
3710489 331.1.1.1 a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like › TBP 0.69 63.0 5.64e-01 100.0% 75.2%
3598831 331.1.1.0 a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like 0.69 62.0 5.71e-01 100.0% 80.0%
3242661 331.1.1.1 a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like › TBP 0.68 61.0 5.67e-01 98.7% 83.2%
3510576 331.1.1.1 a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like › TBP 0.68 60.0 5.96e-01 98.7% 96.2%
3956463 321.1.1.0 a+b two layers › Glutamine synthetase-like › Glutamine synthetase/guanido kinase › Glutamine synthetase/guanido kinase 0.67 57.0 4.06e-01 98.7% 38.8%
4938245 331.1.1.5 a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like › OGG_N 0.67 54.0 5.49e-01 88.3% 96.0%
3584516 5.1.4.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.66 45.0 2.74e-01 71.4% 65.7%
3627280 331.23.1.0 a+b two layers › TBP-like › Integrator IntS9/IntS11 C-terminal domain › Integrator IntS9/IntS11 C-terminal domain 0.65 52.0 5.26e-01 88.3% 96.0%
None 0.64 46.0 2.94e-01 76.6% 98.7%
3739823 331.4.1.0 a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 0.64 54.0 4.72e-01 98.7% 84.8%
3625702 109.54.1.0 alpha superhelices › Repetitive alpha hairpins › C-terminal tetramerization domain of Utp1/Utp21/Utp12/Utp13 › C-terminal tetramerization domain of Utp1/Utp21/Utp12/Utp13 0.64 43.0 2.60e-01 70.1% 56.8%
4178706 331.4.1.0 a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 0.64 54.0 5.13e-01 98.7% 83.2%
None 0.64 43.0 2.90e-01 70.1% 99.3%
None 0.64 43.0 2.61e-01 70.1% 59.2%
3510760 5.1.4.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.64 43.0 2.84e-01 70.1% 95.9%
3226337 109.54.1.0 alpha superhelices › Repetitive alpha hairpins › C-terminal tetramerization domain of Utp1/Utp21/Utp12/Utp13 › C-terminal tetramerization domain of Utp1/Utp21/Utp12/Utp13 0.62 43.0 2.60e-01 71.4% 57.1%
4977467 331.3.1.0 a+b two layers › TBP-like › Bet v1-like › Bet v1-like 0.62 51.0 4.71e-01 94.8% 98.1%
4346967 331.2.1.8 a+b two layers › TBP-like › Phosphoglucomutase, C-terminal domain › Phosphoglucomutase, C-terminal domain › CPSF73-100_C 0.61 52.0 5.05e-01 100.0% 94.4%
4998264 331.1.1.0 a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like 0.60 49.0 4.79e-01 88.3% 85.9%
4984971 3501.1.1.0 a+b two layers › protein PCC1 › protein PCC1 › protein PCC1 0.60 46.0 4.78e-01 100.0% 90.0%
4949239 3501.1.1.0 a+b two layers › protein PCC1 › protein PCC1 › protein PCC1 0.60 48.0 4.96e-01 100.0% 98.6%
4095609 331.1.1.0 a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like 0.60 52.0 4.34e-01 100.0% 91.4%
5070538 3501.1.1.1 a+b two layers › protein PCC1 › protein PCC1 › protein PCC1 › Pcc1 0.59 47.0 4.97e-01 100.0% 95.7%
3506703 244.1.1.0 a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD-linked reductases-C › FAD-linked reductases-C 0.59 44.0 3.84e-01 93.5% 51.7%
3895715 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.59 52.0 4.94e-01 98.7% 84.4%
5043562 3501.1.1.0 a+b two layers › protein PCC1 › protein PCC1 › protein PCC1 0.58 44.0 4.76e-01 100.0% 96.9%
3267814 331.4.1.0 a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 0.58 49.0 4.77e-01 100.0% 93.3%
5063295 331.16.1.1 a+b two layers › TBP-like › TA0095-like › TA0095-like › DUF5611 0.57 47.0 4.37e-01 93.5% 92.0%
5060909 3501.1.1.1 a+b two layers › protein PCC1 › protein PCC1 › protein PCC1 › Pcc1 0.57 46.0 4.74e-01 100.0% 98.6%
4088600 318.1.1.1 a+b two layers › Ribosomal protein L6 › Ribosomal protein L6 › Ribosomal protein L6 › Ribosomal_L6 0.57 49.0 4.80e-01 98.7% 95.3%
3786773 5104.1.1.0 a+b three layers › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases 0.56 35.0 2.98e-01 74.0% 38.5%
5071748 318.1.1.1 a+b two layers › Ribosomal protein L6 › Ribosomal protein L6 › Ribosomal protein L6 › Ribosomal_L6 0.55 47.0 4.79e-01 97.4% 100.0%
4655257 318.1.1.1 a+b two layers › Ribosomal protein L6 › Ribosomal protein L6 › Ribosomal protein L6 › Ribosomal_L6 0.55 48.0 4.77e-01 98.7% 100.0%
4036399 318.1.1.1 a+b two layers › Ribosomal protein L6 › Ribosomal protein L6 › Ribosomal protein L6 › Ribosomal_L6 0.55 47.0 4.62e-01 98.7% 95.3%
3924833 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.54 41.0 3.55e-01 80.5% 84.2%
3266341 4121.1.1.2 a+b three layers › CorA soluble domain-like › CorA soluble domain-like › CorA soluble domain-like › MRS2-like 0.54 49.0 3.41e-01 100.0% 81.6%
4162390 4121.1.1.2 a+b three layers › CorA soluble domain-like › CorA soluble domain-like › CorA soluble domain-like › MRS2-like 0.54 48.0 3.27e-01 100.0% 76.4%
2543109 318.1.1.1 a+b two layers › Ribosomal protein L6 › Ribosomal protein L6 › Ribosomal protein L6 › Ribosomal_L6 0.53 46.0 4.59e-01 100.0% 98.8%
4936727 304.3.1.4 a+b two layers › Alpha-beta plaits › HMA-related › HMA, heavy metal-associated domain › MCR_D 0.53 43.0 3.88e-01 93.5% 72.2%
4456820 318.1.1.1 a+b two layers › Ribosomal protein L6 › Ribosomal protein L6 › Ribosomal protein L6 › Ribosomal_L6 0.53 45.0 4.49e-01 97.4% 95.0%
4981353 318.1.1.1 a+b two layers › Ribosomal protein L6 › Ribosomal protein L6 › Ribosomal protein L6 › Ribosomal_L6 0.53 46.0 4.62e-01 100.0% 98.8%
3838921 318.1.1.0 a+b two layers › Ribosomal protein L6 › Ribosomal protein L6 › Ribosomal protein L6 0.53 45.0 4.50e-01 98.7% 98.8%
4949459 318.1.1.1 a+b two layers › Ribosomal protein L6 › Ribosomal protein L6 › Ribosomal protein L6 › Ribosomal_L6 0.53 45.0 4.46e-01 98.7% 95.0%
4085280 318.1.1.1 a+b two layers › Ribosomal protein L6 › Ribosomal protein L6 › Ribosomal protein L6 › Ribosomal_L6 0.53 45.0 4.49e-01 98.7% 98.8%
4929896 318.1.1.1 a+b two layers › Ribosomal protein L6 › Ribosomal protein L6 › Ribosomal protein L6 › Ribosomal_L6 0.52 44.0 4.43e-01 100.0% 97.5%
4046039 318.1.1.1 a+b two layers › Ribosomal protein L6 › Ribosomal protein L6 › Ribosomal protein L6 › Ribosomal_L6 0.52 45.0 4.37e-01 98.7% 95.3%
4197245 318.1.1.1 a+b two layers › Ribosomal protein L6 › Ribosomal protein L6 › Ribosomal protein L6 › Ribosomal_L6 0.52 44.0 4.36e-01 96.1% 93.8%
4098275 318.1.1.1 a+b two layers › Ribosomal protein L6 › Ribosomal protein L6 › Ribosomal protein L6 › Ribosomal_L6 0.52 44.0 4.36e-01 97.4% 95.0%
5005914 318.1.1.1 a+b two layers › Ribosomal protein L6 › Ribosomal protein L6 › Ribosomal protein L6 › Ribosomal_L6 0.52 44.0 4.32e-01 98.7% 94.1%
4162022 318.1.1.1 a+b two layers › Ribosomal protein L6 › Ribosomal protein L6 › Ribosomal protein L6 › Ribosomal_L6 0.52 46.0 4.63e-01 100.0% 100.0%
3577980 5.1.5.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › WD40 0.51 40.0 2.60e-01 85.7% 76.8%
4045923 4184.1.1.0 beta barrels › MFPT repeat › MFPT repeat › MFPT repeat 0.50 33.0 3.54e-01 81.8% 80.0%
3789886 5.1.4.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.50 40.0 2.57e-01 85.7% 75.4%
D4 high residues 377-458
PDB
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF04441.20 best Pox_VERT_large 146.0 2.00e-42 100.0% 11.7%
D5 high residues 471-601
PDB
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF04441.20 best Pox_VERT_large 186.4 1.20e-54 100.0% 18.5%
CATH (3)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4boqA00 3.90.70.80 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › 0.60 44.0 4.00e-01 77.1% 86.3%
3cw8X03 2.30.38.10 Mainly Beta › Roll › Luciferase; domain 3 › Luciferase; Domain 3 0.59 34.0 4.12e-01 90.1% 91.3%
6m9yA00 3.30.1300.40 Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › 0.56 20.0 2.91e-01 71.0% 68.4%
ECOD (3)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3707160 219.1.1.15 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › OTU 0.58 44.0 4.12e-01 79.4% 96.2%
4024865 295.1.1.0 a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain 0.57 35.0 3.89e-01 89.3% 75.2%
3697095 219.1.1.15 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › OTU 0.53 48.0 4.30e-01 96.9% 89.1%
D6 medium residues 610-702
PDB
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF04441.20 best Pox_VERT_large 112.8 2.20e-32 100.0% 13.1%