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VHv1.4_protein
Euk-VirIchnoviriform_sonorense
VHv1.4_protein__YP_589077__Ichnoviriform_sonorense__10484
Identity
- Accession:
- YP_589077 ↗
- Protein ID:
- VHv1.4_protein
- Kingdom:
- euk
Quality
42.9
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 45-119
Domain cluster:
rep: cysteine_motif_gene-c4.1__YP_001031276__Ichnoviriform_fugitivi__265522__D27-109
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF08008.19 best | Viral_cys_rich | 85.6 | 2.60e-24 | 93.3% | 89.6% |
CATH (4)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1uqwA03 | 3.10.105.10 | Alpha Beta › Roll › Dipeptide-binding Protein; domain 3 › Dipeptide-binding Protein; Domain 3 | 0.57 | 42.0 | 3.03e-01 | 78.7% | 40.0% |
| 2kobA01 | 1.10.150.130 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Tyrosine recombinase, N-terminal domain | 0.55 | 40.0 | 3.80e-01 | 96.0% | 63.4% |
| 2pusA05 | 1.10.1740.80 | Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › | 0.51 | 36.0 | 3.53e-01 | 96.0% | 70.0% |
| 2jvfA00 | 3.30.1710.10 | Alpha Beta › 2-Layer Sandwich › top7, de novo designed protein › top7, de novo designed protein | 0.50 | 31.0 | 2.92e-01 | 93.3% | 48.9% |