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VITF-3_34kda_subunit

Euk-Vir

Western_grey_kangaroopox_virus

VITF-3_34kda_subunit__YP_010085234__Western_grey_kangaroopox_virus__1566307

Identity

Accession:: YP_010085234 ↗
Protein ID:: VITF-3_34kda_subunit
Kingdom:: euk

Quality

81.4 mean pLDDT

Cluster

View cluster (28 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 180-298

PDB

Domain cluster: rep: intermediate_transcription_factor_VITF-3__YP_784319__Nile_crocodilepox_virus__1285600__D182-291

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF04745.18 best	Pox_A8	121.9	4.10e-35	95.0%	38.8%

CATH (18)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2z4vA00	1.10.600.10	Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase	0.61	54.0	4.03e-01	100.0%	77.4%
2jexA01	1.10.287.30	Mainly Alpha › Orthogonal Bundle › Helix Hairpins › E2 (early) protein, N terminal domain, subdomain 1	0.60	36.0	3.92e-01	72.3%	72.9%
6v0kA00	1.10.600.10	Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase	0.59	52.0	3.93e-01	100.0%	77.8%
1vi0A02	1.10.357.10	Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2	0.58	38.0	3.57e-01	88.2%	53.8%
5eroA00	1.10.600.10	Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase	0.58	51.0	3.91e-01	100.0%	79.7%
6b04C00	1.10.600.10	Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase	0.58	52.0	3.79e-01	100.0%	77.0%
1rtwB00	1.20.910.10	Mainly Alpha › Up-down Bundle › Heme Oxygenase; Chain A › Heme oxygenase-like	0.57	50.0	4.17e-01	95.0%	62.5%
1dtoA01	1.10.287.30	Mainly Alpha › Orthogonal Bundle › Helix Hairpins › E2 (early) protein, N terminal domain, subdomain 1	0.57	35.0	3.77e-01	73.1%	70.6%
5hn9C00	1.10.600.10	Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase	0.57	51.0	3.72e-01	100.0%	76.0%
3fcnA00	1.20.1220.20	Mainly Alpha › Up-down Bundle › Malate Synthase G; Chain: A; Domain 4 › Uncharcterised protein PF01724	0.56	39.0	3.61e-01	75.6%	54.4%
4asvA00	1.20.5.420	Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Immunoglobulin FC, subunit C	0.53	31.0	3.65e-01	78.2%	86.1%
4od4A01	1.10.357.140	Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › UbiA prenyltransferase	0.51	45.0	4.16e-01	97.5%	78.2%
2obpA00	1.10.10.10	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain	0.51	28.0	3.27e-01	99.2%	76.5%
2qytA02	1.10.1040.10	Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2	0.51	35.0	3.78e-01	97.5%	84.2%
7tm7B01	3.40.50.2000	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glycogen Phosphorylase B;	0.50	39.0	2.60e-01	79.0%	67.8%
2y51A01	3.40.605.10	Alpha Beta › 3-Layer(aba) Sandwich › Aldehyde Dehydrogenase; Chain A, domain 1 › Aldehyde Dehydrogenase; Chain A, domain 1	0.50	41.0	3.13e-01	90.8%	90.3%
1tjlA00	1.20.120.910	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › DksA, coiled-coil domain	0.50	38.0	3.60e-01	80.7%	69.7%
4r8zA00	1.10.3210.10	Mainly Alpha › Orthogonal Bundle › Hypothetical protein af1432 › Hypothetical protein af1432	0.50	45.0	3.70e-01	100.0%	74.3%

ECOD (9)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3516846	141.1.1.1 ↗	alpha bundles › Terpenoid synthases › Terpenoid synthases › Terpenoid synthases › polyprenyl_synt	0.60	53.0	3.75e-01	100.0%	77.4%
4160508	141.1.1.1 ↗	alpha bundles › Terpenoid synthases › Terpenoid synthases › Terpenoid synthases › polyprenyl_synt	0.59	53.0	3.88e-01	100.0%	59.7%
3208995	141.1.1.1 ↗	alpha bundles › Terpenoid synthases › Terpenoid synthases › Terpenoid synthases › polyprenyl_synt	0.59	52.0	3.89e-01	100.0%	74.6%
5068031	141.1.1.3 ↗	alpha bundles › Terpenoid synthases › Terpenoid synthases › Terpenoid synthases › UbiA	0.58	52.0	4.02e-01	99.2%	65.2%
4982818	601.30.1.1 ↗	alpha bundles › Four-helical up-and-down bundle › Helical bundle domain in hypothetical protein PH1320 › Helical bundle domain in hypothetical protein PH1320 › NOG1_N	0.58	40.0	4.06e-01	81.5%	70.8%
4010267	192.8.1.131 ↗	alpha bundles › Long alpha-hairpin › Eukaryotic DNA topoisomerase I, dispensable insert domain › Eukaryotic DNA topoisomerase I, dispensable insert domain › GNVR	0.57	43.0	4.22e-01	79.0%	84.6%
3946576	5086.1.1.66 ↗	alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › GNVR	0.57	43.0	4.13e-01	79.0%	82.2%
4683248	5086.1.1.66 ↗	alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › GNVR	0.56	42.0	3.99e-01	79.0%	78.6%
3188203	5059.1.1.3 ↗	alpha bundles › Drug/Metabolite transporter › Drug/Metabolite transporter › Drug/Metabolite transporter › TPT	0.52	42.0	3.09e-01	87.4%	73.4%

D2 medium residues 47-161

PDB

Domain cluster: rep: putative_A8R_protein__YP_010085795__Orthopoxvirus_Abatino__2478919__D48-142

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF04745.18 best	Pox_A8	212.1	1.30e-62	100.0%	39.5%