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VITF-3_45kda_subunit_-Cop-A23R-
Euk-VirAdoxophyes_honmai_entomopoxvirus_L
VITF-3_45kda_subunit_-Cop-A23R-__YP_008003912__Adoxophyes_honmai_entomopoxvirus_L__1293540
Identity
- Accession:
- YP_008003912 ↗
- Protein ID:
- VITF-3_45kda_subunit_-Cop-A23R-
- Kingdom:
- euk
Quality
68.3
mean pLDDT
Cluster
View cluster (34 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 15-79_173-266
Domain cluster:
rep: VITF-3_45kda_subunit_-Cop-A23R-__YP_008004520__Choristoneura_rosaceana_entomopoxvirus_L__1293539__D23-101_197-266
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF05718.18 best | Pox_int_trans | 28.2 | 1.10e-06 | 59.8% | 21.5% |
D2
high
residues 272-351
Domain cluster:
representative
CATH (12)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5jeaD00 | 3.30.230.70 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › GHMP Kinase, N-terminal domain | 0.63 | 48.0 | 3.47e-01 | 81.2% | 67.4% |
| 4py9A02 | 3.10.310.30 | Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › | 0.63 | 42.0 | 3.63e-01 | 70.0% | 43.7% |
| 2vsgA01 | 3.90.150.10 | Alpha Beta › Alpha-Beta Complex › Variant Surface Glycoprotein; Chain A domain 1 › Variant Surface Glycoprotein, subunit A domain 1 | 0.62 | 48.0 | 3.63e-01 | 85.0% | 35.9% |
| 2r55A00 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.60 | 45.0 | 3.41e-01 | 82.5% | 80.3% |
| 7ar9z01 | 2.160.10.10 | Mainly Beta › 3 Solenoid › UDP N-Acetylglucosamine Acyltransferase; domain 1 › Hexapeptide repeat proteins | 0.58 | 43.0 | 3.14e-01 | 78.8% | 75.9% |
| 5ljmA00 | 1.20.58.2190 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.58 | 45.0 | 3.40e-01 | 85.0% | 69.0% |
| 2jhnA01 | 3.30.310.20 | Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › DNA-3-methyladenine glycosylase AlkA, N-terminal domain | 0.57 | 49.0 | 4.44e-01 | 100.0% | 98.2% |
| 1d5aA03 | 3.90.1600.10 | Alpha Beta › Alpha-Beta Complex › Palm domain of DNA polymerase › B family DNA polymerase, palm domain | 0.52 | 44.0 | 3.63e-01 | 100.0% | 86.6% |
| 2w7yA01 | 3.40.190.10 | Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II | 0.52 | 43.0 | 3.31e-01 | 93.8% | 53.3% |
| 7cymA03 | 2.60.40.60 | Mainly Beta › Sandwich › Immunoglobulin-like › Cadherins | 0.52 | 37.0 | 3.69e-01 | 96.2% | 71.3% |
| 1ydxA03 | 3.90.220.20 | Alpha Beta › Alpha-Beta Complex › Adenine-n6-DNA-methyltransferase TaqI; Chain A, domain 2 › DNA methylase specificity domains | 0.51 | 40.0 | 3.32e-01 | 85.0% | 83.3% |
| 1s3iA01 | 3.40.50.170 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Formyl transferase, N-terminal domain | 0.50 | 41.0 | 3.07e-01 | 90.0% | 86.8% |
ECOD (15)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3417568 | 245.1.1.0 ↗ | a+b two layers › Ribonuclease PH domain 2-like › Ribonuclease PH domain 2 › Ribonuclease PH domain 2 | 0.67 | 49.0 | 4.53e-01 | 77.5% | 98.1% |
| 3920188 | 331.3.1.3 ↗ | a+b two layers › TBP-like › Bet v1-like › Bet v1-like › START | 0.65 | 48.0 | 3.48e-01 | 80.0% | 76.2% |
| 3494747 | 331.3.1.3 ↗ | a+b two layers › TBP-like › Bet v1-like › Bet v1-like › START | 0.64 | 48.0 | 3.42e-01 | 81.2% | 77.6% |
| 4946346 | 327.11.2.0 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) | 0.63 | 54.0 | 4.94e-01 | 100.0% | 80.0% |
| 1065716 | 5104.1.1.1 ↗ | a+b three layers › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › DHHA1 | 0.62 | 42.0 | 3.62e-01 | 70.0% | 43.7% |
| 5000800 | 245.1.1.1 ↗ | a+b two layers › Ribonuclease PH domain 2-like › Ribonuclease PH domain 2 › Ribonuclease PH domain 2 › RNase_PH_C | 0.62 | 43.0 | 4.32e-01 | 72.5% | 97.6% |
| 3776278 | 304.28.1.9 ↗ | a+b two layers › Alpha-beta plaits › Ferredoxin domains in multidrug efflux transporter › Multidrug efflux transporter AcrB pore domain › Patched | 0.60 | 52.0 | 3.06e-01 | 100.0% | 19.2% |
| 3255804 | 208.1.1.1 ↗ | beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Trimeric LpxA-like enzymes › Trimeric LpxA-like enzymes › Hexapep | 0.59 | 45.0 | 3.29e-01 | 82.5% | 60.0% |
| 3987940 | 3227.1.1.1 ↗ | alpha complex topology › phosphorylation-coupled saccharide transporter ChbC › phosphorylation-coupled saccharide transporter ChbC › phosphorylation-coupled saccharide transporter ChbC › PTS_EIIC | 0.56 | 48.0 | 3.10e-01 | 100.0% | 40.0% |
| 3687276 | 150.5.1.0 ↗ | alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › ESAT-6 like › ESAT-6 like | 0.55 | 43.0 | 4.28e-01 | 87.5% | 87.1% |
| 3501223 | 7516.1.1.8 ↗ | a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Galactosyl_T | 0.55 | 37.0 | 2.52e-01 | 70.0% | 51.7% |
| 4889279 | 109.4.1.2103 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Xpo1, CRM1_C, CRM1_repeat, CRM1_repeat_2, CRM1_repeat_3 | 0.54 | 40.0 | 2.39e-01 | 86.3% | 9.0% |
| 3113012 | 2484.1.1.2 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Actin | 0.52 | 38.0 | 3.11e-01 | 81.2% | 86.9% |
| 3756202 | 5001.1.1.43 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › V1R | 0.51 | 45.0 | 3.04e-01 | 100.0% | 34.4% |
| 1325196 | 304.51.1.3 ↗ | a+b two layers › Alpha-beta plaits › CRISPR transcript (pre-crRNA) processing endoribonuclease-related › CRISPR transcript (pre-crRNA) processing endoribonuclease-related › CRISPR_assoc | 0.50 | 34.0 | 2.96e-01 | 70.0% | 79.7% |
D3
medium
residues 91-140