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VLF-1

Euk-Vir

Adoxophyes_orana_nucleopolyhedrovirus

VLF-1__YP_002300576__Adoxophyes_orana_nucleopolyhedrovirus__542343

Identity

Accession:: YP_002300576 ↗
Protein ID:: VLF-1
Kingdom:: euk

Quality

76.8 mean pLDDT

Taxonomy

Naldaviricetes› Lefavirales› Baculoviridae› Alphabaculovirus› Adoxophyes_orana_nucleopolyhedrovirus

TaxID: 542343

Cluster

View cluster (138 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 6-133

PDB

Domain cluster: rep: VLF-1__YP_006908609__Epinotia_aporema_granulovirus__166056__D7-38_57-138

CATH (17)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
1dc1A02	1.10.238.90	Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › Restriction endonuclease BsobI, helical domain	0.62	34.0	3.99e-01	93.8%	76.1%
4uiqB00	1.10.490.10	Mainly Alpha › Orthogonal Bundle › Globin-like › Globins	0.57	39.0	3.67e-01	93.0%	56.9%
3nufB00	1.10.1790.10	Mainly Alpha › Orthogonal Bundle › PTS-regulatory domain, PRD › PRD domain	0.54	38.0	4.07e-01	91.4%	82.1%
3d5lB01	1.10.10.10	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain	0.54	37.0	4.11e-01	90.6%	88.2%
2ffhA03	1.10.260.30	Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › Signal recognition particle, SRP54 subunit, M-domain	0.54	36.0	3.98e-01	88.3%	87.0%
3qkiB01	3.40.50.10490	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glucose-6-phosphate isomerase like protein; domain 1	0.53	48.0	3.46e-01	100.0%	86.8%
4ertA01	1.10.490.160	Mainly Alpha › Orthogonal Bundle › Globin-like ›	0.53	48.0	4.47e-01	100.0%	90.8%
2nr9A00	1.20.1540.10	Mainly Alpha › Up-down Bundle › Rhomboid-like fold › Rhomboid-like	0.53	41.0	3.59e-01	100.0%	54.2%
2oifB00	1.10.490.10	Mainly Alpha › Orthogonal Bundle › Globin-like › Globins	0.53	40.0	3.78e-01	93.0%	66.9%
6iw6B01	1.10.1410.10	Mainly Alpha › Orthogonal Bundle › Poly(a)-polymerase, middle domain ›	0.52	46.0	3.92e-01	99.2%	89.4%
1gcvB00	1.10.490.10	Mainly Alpha › Orthogonal Bundle › Globin-like › Globins	0.52	38.0	3.79e-01	77.3%	94.1%
6k41R00	1.20.1070.10	Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins	0.52	44.0	3.60e-01	93.8%	77.0%
2zs0A00	1.10.490.10	Mainly Alpha › Orthogonal Bundle › Globin-like › Globins	0.51	37.0	3.67e-01	92.2%	69.3%
1cqxA01	1.10.490.10	Mainly Alpha › Orthogonal Bundle › Globin-like › Globins	0.51	36.0	3.45e-01	72.7%	84.0%
7krzA02	1.10.8.60	Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 ›	0.51	32.0	3.72e-01	78.1%	95.2%
2f2gA00	1.20.910.10	Mainly Alpha › Up-down Bundle › Heme Oxygenase; Chain A › Heme oxygenase-like	0.50	44.0	3.79e-01	100.0%	82.8%
4akgA16	1.10.8.720	Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Region D6 of dynein motor	0.50	35.0	3.32e-01	94.5%	56.4%

ECOD (3)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3814488	101.1.10.0 ↗	alpha arrays › HTH › HTH › Cyclin-like	0.60	42.0	4.48e-01	97.7%	84.5%
4963223	604.39.1.0 ↗	alpha bundles › Spectrin repeat-like › S-component of energy-coupling factor (ECF) transporters › S-component of energy-coupling factor (ECF) transporters	0.52	35.0	3.54e-01	85.9%	66.9%
3178891	632.25.1.3 ↗	alpha bundles › immunoglobulin/albumin-binding domain-like › GBS CAMP factor N-terminal domain › GBS CAMP factor N-terminal domain › NACHT_N	0.51	36.0	2.99e-01	73.4%	82.1%

D2 high residues 154-332

PDB

Domain cluster: rep: MK448963.1__QBX29522.1__Javan498_0048__00001__D46-231

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF00589.28 best	Phage_integrase	92.6	3.60e-26	95.0%	83.7%