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VLF-1

Euk-Vir

Tipula_oleracea_nudivirus

VLF-1__YP_009116712__Tipula_oleracea_nudivirus__1546257

Identity

Accession:
YP_009116712 ↗
Protein ID:
VLF-1
Kingdom:
euk

Quality

64.6 mean pLDDT

Taxonomy

Naldaviricetes› Lefavirales› Nudiviridae› Deltanudivirus› Tipula_oleracea_nudivirus

TaxID: 1546257

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 81-153
PDB
D2 medium residues 166-305
PDB
Domain cluster: representative
CATH (2)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1n4kA02 1.25.10.30 Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › IP3 receptor type 1 binding core, RIH domain 0.56 41.0 4.03e-01 93.6% 70.9%
2xgjA04 1.20.1500.20 Mainly Alpha › Up-down Bundle › YheA-like fold › 0.52 32.0 3.29e-01 75.7% 63.6%
ECOD (8)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4031846 101.1.8.1 ↗ alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.73 56.0 5.88e-01 99.3% 88.8%
4973226 101.1.8.1 ↗ alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.72 52.0 5.57e-01 100.0% 86.7%
5029991 101.1.8.1 ↗ alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.68 50.0 5.25e-01 99.3% 84.0%
4929009 101.1.8.1 ↗ alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.68 53.0 5.47e-01 99.3% 87.7%
5030307 101.1.8.1 ↗ alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.66 49.0 5.16e-01 100.0% 85.6%
3587645 101.1.8.1 ↗ alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.63 51.0 5.21e-01 96.4% 88.9%
4082783 101.1.8.1 ↗ alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.62 55.0 5.27e-01 100.0% 84.4%
3399005 3291.1.1.0 ↗ alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related 0.57 23.0 2.82e-01 88.6% 56.7%
D3 medium residues 306-373
PDB