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VLF-1

Euk-Vir

Drosophila_innubila_nudivirus

VLF-1__YP_009553073__Drosophila_innubila_nudivirus__2057187

Identity

Accession:
YP_009553073 ↗
Protein ID:
VLF-1
Kingdom:
euk

Quality

64.4 mean pLDDT

Taxonomy

Naldaviricetes› Lefavirales› Nudiviridae› Alphanudivirus› Drosophila_innubila_nudivirus

TaxID: 2057187

Cluster

View cluster (5 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 5-100
PDB
Domain cluster: rep: vlf-1__YP_002321341__Oryctes_rhinoceros_nudivirus__92521__D1-91
D2 high residues 379-502_525-544
PDB
D3 medium residues 107-124_260-319
PDB
D4 medium residues 125-259
PDB
Domain cluster: representative
CATH (17)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4wzxA01 1.20.58.80 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit 0.71 34.0 4.45e-01 74.8% 81.3%
1xeqB00 1.10.287.10 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › S15/NS1, RNA-binding 0.70 41.0 4.98e-01 91.1% 91.8%
5jk0B01 1.10.443.10 Mainly Alpha › Orthogonal Bundle › hpI Integrase; Chain A › Intergrase catalytic core 0.69 56.0 5.17e-01 100.0% 68.2%
2qywA00 1.20.58.400 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › t-snare proteins 0.60 36.0 4.14e-01 74.8% 82.1%
3zheC01 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.59 34.0 3.06e-01 85.2% 40.8%
3rkvA00 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.58 33.0 3.24e-01 83.7% 49.7%
4u7iA00 1.20.58.80 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit 0.55 32.0 3.75e-01 70.4% 81.7%
3edvB01 1.20.58.60 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.54 35.0 3.54e-01 77.0% 64.0%
1d3yA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.53 26.0 3.34e-01 85.9% 83.1%
1wcrA00 1.20.58.80 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit 0.52 33.0 3.78e-01 70.4% 84.5%
3kkbA00 1.20.120.880 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Histidine kinase (KinB), sensor domain 0.52 38.0 3.99e-01 87.4% 83.3%
8alzB08 1.10.3380.10 Mainly Alpha › Orthogonal Bundle › Sec63 N-terminal domain-like fold › Sec63 N-terminal domain-like domain 0.51 38.0 3.88e-01 77.0% 100.0%
5yixA00 1.10.601.10 Mainly Alpha › Orthogonal Bundle › RNA Polymerase Primary Sigma Factor › RNA Polymerase Primary Sigma Factor 0.51 40.0 3.04e-01 83.0% 92.6%
5wzoA00 1.20.90.10 Mainly Alpha › Up-down Bundle › Phospholipase A2 › Phospholipase A2 domain 0.51 33.0 3.48e-01 88.9% 71.5%
3bj6B00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.50 36.0 3.50e-01 100.0% 65.6%
1p4xA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.50 37.0 3.82e-01 99.3% 81.1%
3bjaA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.50 35.0 3.49e-01 100.0% 69.1%
ECOD (46)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5032561 101.1.8.1 ↗ alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.80 55.0 6.24e-01 99.3% 90.5%
4192665 101.1.8.1 ↗ alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.77 60.0 6.32e-01 100.0% 90.8%
4153666 101.1.8.1 ↗ alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.76 61.0 6.16e-01 100.0% 83.7%
4964228 101.1.8.1 ↗ alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.76 59.0 5.93e-01 100.0% 80.0%
4973226 101.1.8.1 ↗ alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.75 55.0 5.86e-01 100.0% 85.8%
4095013 101.1.8.1 ↗ alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.75 61.0 6.16e-01 100.0% 85.9%
5028332 101.1.8.1 ↗ alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.75 57.0 5.89e-01 100.0% 84.8%
4338286 101.1.8.1 ↗ alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.75 59.0 6.00e-01 100.0% 83.7%
4969226 101.1.8.1 ↗ alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.74 59.0 5.90e-01 100.0% 82.2%
4463631 101.1.8.1 ↗ alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.74 61.0 6.19e-01 100.0% 88.1%
4034370 101.1.8.1 ↗ alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.73 56.0 5.95e-01 100.0% 90.0%
4313957 101.1.8.1 ↗ alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.73 61.0 6.15e-01 100.0% 88.1%
4247514 101.1.8.1 ↗ alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.73 59.0 5.92e-01 100.0% 84.4%
3945160 101.1.8.1 ↗ alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.73 59.0 6.07e-01 100.0% 88.5%
5029991 101.1.8.1 ↗ alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.73 55.0 5.68e-01 100.0% 84.0%
4044870 101.1.8.1 ↗ alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.73 59.0 5.94e-01 100.0% 85.2%
5037644 101.1.8.1 ↗ alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.72 53.0 5.60e-01 100.0% 85.0%
4996190 101.1.8.1 ↗ alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.72 58.0 6.04e-01 100.0% 91.2%
4931987 101.1.8.1 ↗ alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.72 52.0 5.70e-01 100.0% 91.8%
5008464 101.1.8.1 ↗ alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.71 53.0 4.73e-01 97.0% 55.7%
5030307 101.1.8.1 ↗ alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.71 54.0 5.64e-01 100.0% 85.6%
3964227 101.1.8.1 ↗ alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.71 57.0 5.82e-01 100.0% 86.9%
4960057 101.1.8.1 ↗ alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.71 59.0 5.85e-01 100.0% 85.0%
3984925 101.1.8.1 ↗ alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.71 57.0 5.81e-01 100.0% 87.7%
4004713 101.1.8.1 ↗ alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.71 55.0 5.60e-01 100.0% 81.5%
4975762 101.1.8.1 ↗ alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.70 55.0 5.70e-01 100.0% 88.0%
3979114 101.1.8.1 ↗ alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.70 55.0 5.61e-01 100.0% 83.8%
3839627 101.1.8.1 ↗ alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.70 57.0 5.79e-01 100.0% 87.4%
3588110 101.1.8.1 ↗ alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.69 62.0 6.16e-01 100.0% 91.4%
4966027 101.1.8.1 ↗ alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.69 54.0 4.83e-01 100.0% 59.8%
4980638 101.1.8.1 ↗ alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.69 60.0 5.80e-01 100.0% 83.3%
5011490 101.1.8.1 ↗ alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.69 60.0 5.82e-01 100.0% 84.7%
3588206 101.1.8.1 ↗ alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.69 61.0 5.86e-01 100.0% 84.7%
4200953 101.1.8.1 ↗ alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.68 62.0 5.93e-01 100.0% 85.2%
3942448 101.1.8.1 ↗ alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.68 63.0 6.12e-01 100.0% 92.7%
4981563 101.1.8.0 ↗ alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes 0.68 52.0 5.71e-01 80.0% 100.0%
4964815 101.1.8.1 ↗ alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.67 60.0 5.84e-01 100.0% 87.3%
3820045 603.1.1.118 ↗ alpha bundles › STAT-like › t-snare proteins › t-snare proteins › DUF7610 0.63 35.0 4.28e-01 75.6% 85.9%
5081700 101.1.8.1 ↗ alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.61 57.0 5.32e-01 100.0% 85.5%
3917917 604.1.1.0 ↗ alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.56 36.0 3.97e-01 76.3% 79.1%
3667727 109.4.1.420 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR 0.55 32.0 2.60e-01 83.7% 30.2%
3945003 192.29.1.0 ↗ alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) 0.54 38.0 3.67e-01 83.0% 64.0%
3247566 5001.1.1.60 ↗ alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7TM_GPCR_Srx 0.52 37.0 2.84e-01 71.9% 67.0%
3737325 109.4.1.70 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › CID 0.51 40.0 3.87e-01 85.2% 71.6%
5039039 101.1.2.15 ↗ alpha arrays › HTH › HTH › winged helix domain › MarR 0.51 33.0 3.47e-01 98.5% 71.2%
3604282 150.1.1.0 ↗ alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin 0.50 36.0 3.86e-01 75.6% 90.0%