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VLF-1

Euk-Vir

Homarus_gammarus_nudivirus

VLF-1__YP_010087720__Homarus_gammarus_nudivirus__2509616

Identity

Accession:
YP_010087720 ↗
Protein ID:
VLF-1
Kingdom:
euk

Quality

80.1 mean pLDDT

Cluster

View cluster (2 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 4-69
PDB
Domain cluster: rep: orf11_gene_product__YP_004956759__Helicoverpa_zea_nudivirus_2__1128424__D1-63
D2 high residues 84-240
PDB
Domain cluster: rep: VLF-1__YP_009116712__Tipula_oleracea_nudivirus__1546257__D166-305
CATH (2)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1f44A01 1.10.443.10 Mainly Alpha › Orthogonal Bundle › hpI Integrase; Chain A › Intergrase catalytic core 0.67 61.0 5.68e-01 97.5% 82.5%
5jk0B01 1.10.443.10 Mainly Alpha › Orthogonal Bundle › hpI Integrase; Chain A › Intergrase catalytic core 0.67 58.0 5.63e-01 96.8% 83.8%
ECOD (6)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4153666 101.1.8.1 ↗ alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.73 57.0 6.10e-01 89.8% 94.1%
4044870 101.1.8.1 ↗ alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.71 55.0 5.91e-01 89.8% 93.3%
4952765 101.1.8.1 ↗ alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.70 56.0 5.92e-01 91.1% 94.3%
3839222 101.1.8.1 ↗ alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.69 57.0 6.06e-01 90.4% 97.9%
3682114 136.1.1.1 ↗ alpha complex topology › Heme-dependent peroxidases › Heme-dependent peroxidases › Heme-dependent peroxidases › peroxidase 0.51 40.0 3.21e-01 82.8% 88.1%
3447137 601.7.1.0 ↗ alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain 0.50 32.0 3.12e-01 89.8% 57.1%