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VP1054
Euk-VirArtogeia_rapae_granulovirus
VP1054__YP_003429440__Artogeia_rapae_granulovirus__362830
Identity
- Accession:
- YP_003429440 ↗
- Protein ID:
- VP1054
- Kingdom:
- euk
Quality
72.6
mean pLDDT
Taxonomy
TaxID: 362830
Cluster
View cluster (46 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 22-98
Domain cluster:
rep: vp1054__YP_009112672__Agrotis_segetum_nucleopolyhedrovirus_B__1580580__D40-103
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF05789.17 best | Baculo_VP1054 | 54.0 | 2.90e-14 | 100.0% | 24.7% |
D2
medium
residues 99-330
Domain cluster:
rep: viral_capsid_associated_protein__YP_009118574__Condylorrhiza_vestigialis_MNPV__1592576__D118-160_199-378
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF05789.17 best | Baculo_VP1054 | 264.0 | 3.40e-78 | 99.1% | 67.6% |
CATH (6)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5f9eB02 | 1.10.510.10 | Mainly Alpha › Orthogonal Bundle › Transferase(Phosphotransferase); domain 1 › Transferase(Phosphotransferase) domain 1 | 0.63 | 46.0 | 4.85e-01 | 99.1% | 83.8% |
| 5v5nA02 | 1.10.510.10 | Mainly Alpha › Orthogonal Bundle › Transferase(Phosphotransferase); domain 1 › Transferase(Phosphotransferase) domain 1 | 0.59 | 42.0 | 4.39e-01 | 99.1% | 78.8% |
| 5zb2B00 | 3.30.710.10 | Alpha Beta › 2-Layer Sandwich › Potassium Channel Kv1.1; Chain A › Potassium Channel Kv1.1; Chain A | 0.57 | 18.0 | 3.01e-01 | 74.1% | 76.9% |
| 7aqbB02 | 1.10.510.10 | Mainly Alpha › Orthogonal Bundle › Transferase(Phosphotransferase); domain 1 › Transferase(Phosphotransferase) domain 1 | 0.57 | 45.0 | 4.93e-01 | 99.1% | 99.0% |
| 3oz6B02 | 1.10.510.10 | Mainly Alpha › Orthogonal Bundle › Transferase(Phosphotransferase); domain 1 › Transferase(Phosphotransferase) domain 1 | 0.56 | 49.0 | 4.93e-01 | 99.6% | 91.8% |
| 1gngA02 | 1.10.510.10 | Mainly Alpha › Orthogonal Bundle › Transferase(Phosphotransferase); domain 1 › Transferase(Phosphotransferase) domain 1 | 0.51 | 48.0 | 4.69e-01 | 99.1% | 96.4% |
ECOD (2)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3498572 | 206.1.1.1 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase | 0.59 | 48.0 | 4.18e-01 | 99.6% | 56.8% |
| 3926219 | 206.1.1.1 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase | 0.56 | 48.0 | 4.10e-01 | 99.1% | 57.3% |