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VP1054

Euk-Vir

Plodia_interpunctella_granulovirus

VP1054__YP_009330253__Plodia_interpunctella_granulovirus__262175

Identity

Accession:
YP_009330253 ↗
Protein ID:
VP1054
Kingdom:
euk

Quality

76.0 mean pLDDT

Taxonomy

Naldaviricetes› Lefavirales› Baculoviridae› Betabaculovirus› Plodia_interpunctella_granulovirus

TaxID: 262175

Cluster

View cluster (46 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 20-100
PDB
Domain cluster: rep: vp1054__YP_009112672__Agrotis_segetum_nucleopolyhedrovirus_B__1580580__D40-103
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF05789.17 best Baculo_VP1054 43.8 3.60e-11 100.0% 25.3%
CATH (71)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2qpvA00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.75 54.0 4.56e-01 75.3% 86.4%
3l1aA01 3.30.930.10 Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 0.74 65.0 4.74e-01 96.3% 80.6%
1wqwA01 3.30.930.10 Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 0.70 60.0 4.61e-01 95.1% 82.4%
2l8oA00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.70 52.0 4.22e-01 77.8% 84.0%
2p0lA00 3.30.930.10 Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 0.69 62.0 4.28e-01 98.8% 82.7%
1xkpB00 3.30.1460.10 Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › 0.67 60.0 5.23e-01 98.8% 69.4%
5bw0F00 3.30.1300.30 Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › GSPII I/J protein-like 0.67 38.0 3.67e-01 87.7% 49.5%
4ctaA02 3.30.70.2860 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.67 45.0 4.64e-01 72.8% 74.7%
3rrkA03 3.30.70.2750 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.66 46.0 4.76e-01 81.5% 78.4%
2ej9A01 3.30.930.10 Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 0.66 59.0 4.47e-01 98.8% 80.9%
4bxiA00 3.30.565.10 Alpha Beta › 2-Layer Sandwich › Heat Shock Protein 90 › Histidine kinase-like ATPase, C-terminal domain 0.66 55.0 4.53e-01 91.4% 96.6%
2y3uA02 3.30.980.50 Alpha Beta › 2-Layer Sandwich › Threonyl-tRNA Synthetase; Chain A, domain 2 › 0.66 56.0 5.02e-01 93.8% 89.4%
2mklC00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.65 53.0 4.85e-01 87.7% 75.2%
1fp5A01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.65 53.0 4.93e-01 87.7% 97.0%
3wirA01 2.70.98.40 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › Glycoside hydrolase, family 65, N-terminal domain 0.64 54.0 3.77e-01 91.4% 80.4%
3f62A00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.64 53.0 4.77e-01 88.9% 76.9%
1jw3A00 3.55.10.10 Alpha Beta › 3-Layer(bab) Sandwich › Archease, Possible Chaperone; Chain: A; domain 1 › Archease domain 0.64 48.0 4.01e-01 80.2% 100.0%
6a2bA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.64 51.0 5.00e-01 87.7% 80.9%
3ibwA00 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.62 41.0 4.22e-01 72.8% 69.6%
2rioA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.62 50.0 5.02e-01 88.9% 85.4%
1r62A00 3.30.565.10 Alpha Beta › 2-Layer Sandwich › Heat Shock Protein 90 › Histidine kinase-like ATPase, C-terminal domain 0.62 51.0 4.29e-01 88.9% 96.3%
2fbjH02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.61 47.0 4.88e-01 81.5% 93.2%
6n3oA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.61 52.0 5.10e-01 96.3% 91.1%
1dr9A02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.61 49.0 4.70e-01 87.7% 74.7%
5h5zA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.61 49.0 4.82e-01 87.7% 83.0%
6efyA03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.61 49.0 4.63e-01 87.7% 74.5%
3uebF00 3.30.300.100 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › MTH677-like 0.61 42.0 3.97e-01 72.8% 82.0%
2zxqA01 2.70.98.10 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.61 52.0 3.66e-01 100.0% 90.1%
1s28A00 3.30.1460.10 Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › 0.60 53.0 4.57e-01 100.0% 68.5%
4k2xB02 3.30.70.2450 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.60 38.0 3.79e-01 70.4% 62.2%
3mjgX03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.60 49.0 4.56e-01 87.7% 72.3%
3oq3B03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.60 49.0 4.52e-01 87.7% 72.8%
1i82A00 2.60.40.1190 Mainly Beta › Sandwich › Immunoglobulin-like › 0.60 51.0 4.03e-01 100.0% 68.3%
3hr6A02 2.60.40.740 Mainly Beta › Sandwich › Immunoglobulin-like › 0.60 52.0 4.19e-01 96.3% 68.8%
4g3cA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.59 48.0 4.12e-01 88.9% 56.3%
2k3iA01 3.30.70.860 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.59 44.0 4.40e-01 80.2% 83.5%
1vi7A01 3.30.230.30 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › Impact, N-terminal domain 0.59 45.0 3.80e-01 81.5% 71.9%
1b24A01 3.10.28.10 Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases 0.59 50.0 4.76e-01 93.8% 83.2%
4bfiB02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.59 47.0 4.54e-01 86.4% 77.8%
4gf3A00 3.30.1460.10 Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › 0.59 49.0 4.41e-01 98.8% 65.0%
4wxaA00 3.30.310.50 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Alpha-D-phosphohexomutase, C-terminal domain 0.58 41.0 4.11e-01 74.1% 72.6%
4wovA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.58 47.0 4.65e-01 88.9% 86.9%
4anoA00 1.10.510.10 Mainly Alpha › Orthogonal Bundle › Transferase(Phosphotransferase); domain 1 › Transferase(Phosphotransferase) domain 1 0.58 50.0 3.79e-01 98.8% 52.6%
5mmjh01 3.30.1370.30 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › 0.58 43.0 4.51e-01 96.3% 86.7%
4xeaA01 3.30.830.10 Alpha Beta › 2-Layer Sandwich › Cytochrome Bc1 Complex; Chain A, domain 1 › Metalloenzyme, LuxS/M16 peptidase-like 0.58 50.0 3.69e-01 98.8% 87.0%
4i0kA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.57 46.0 4.39e-01 87.7% 93.7%
2nwuB01 3.30.1440.10 Alpha Beta › 2-Layer Sandwich › 50s Ribosomal Protein L5; Chain: A, › Ribosomal protein L5 0.57 39.0 3.43e-01 71.6% 92.9%
4iofB01 3.30.830.10 Alpha Beta › 2-Layer Sandwich › Cytochrome Bc1 Complex; Chain A, domain 1 › Metalloenzyme, LuxS/M16 peptidase-like 0.57 50.0 3.98e-01 100.0% 87.0%
2clqA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.57 45.0 4.50e-01 91.4% 85.9%
3c3pA00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.56 46.0 3.52e-01 91.4% 75.8%
3go9A02 3.30.830.10 Alpha Beta › 2-Layer Sandwich › Cytochrome Bc1 Complex; Chain A, domain 1 › Metalloenzyme, LuxS/M16 peptidase-like 0.56 48.0 3.64e-01 100.0% 94.9%
6ef7A00 2.60.40.4140 Mainly Beta › Sandwich › Immunoglobulin-like › 0.56 45.0 3.93e-01 87.7% 93.5%
5yppA00 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.56 38.0 3.75e-01 71.6% 72.2%
5kckA00 3.60.120.10 Alpha Beta › 4-Layer Sandwich › Anthranilate synthase › Anthranilate synthase 0.56 49.0 3.13e-01 100.0% 72.0%
2rs7A01 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.56 31.0 3.28e-01 88.9% 58.1%
1xauA00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.56 46.0 4.29e-01 92.6% 71.2%
2cg9X01 2.60.40.790 Mainly Beta › Sandwich › Immunoglobulin-like › 0.56 46.0 4.27e-01 88.9% 87.0%
4uzgA01 2.60.40.740 Mainly Beta › Sandwich › Immunoglobulin-like › 0.56 48.0 3.91e-01 96.3% 87.8%
3tekA00 3.30.470.50 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › 0.55 41.0 3.51e-01 80.2% 84.2%
4rmoA00 3.10.129.130 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › 0.55 47.0 3.90e-01 98.8% 94.2%
3c1mA02 3.30.2130.10 Alpha Beta › 2-Layer Sandwich › VC0802-like › VC0802-like 0.55 43.0 3.53e-01 87.7% 87.8%
6lynD01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.55 40.0 3.99e-01 88.9% 73.6%
5l10B00 3.30.450.80 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Transcription factor LuxR-like, autoinducer-binding domain 0.53 44.0 3.48e-01 92.6% 69.4%
3isyA00 2.60.40.2360 Mainly Beta › Sandwich › Immunoglobulin-like › Intracellular proteinase inhibitor BsuPI 0.53 42.0 3.76e-01 87.7% 78.6%
3o6qA02 3.30.70.2720 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.52 43.0 3.87e-01 92.6% 79.8%
2ab5B01 3.10.28.10 Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases 0.52 43.0 3.76e-01 93.8% 64.1%
2pjdA01 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.51 42.0 3.48e-01 92.6% 85.3%
5zbeA02 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.51 44.0 4.03e-01 95.1% 87.9%
6u6pA01 3.30.1070.10 Alpha Beta › 2-Layer Sandwich › Cell Cycle; Chain A › Cell division topological specificity factor MinE 0.51 41.0 4.22e-01 90.1% 100.0%
2di7A01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.50 41.0 3.77e-01 97.5% 68.2%
5mw5A01 2.60.40.3510 Mainly Beta › Sandwich › Immunoglobulin-like › 0.50 34.0 2.92e-01 71.6% 78.8%
ECOD (90)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4583708 4955.1.1.0 ↗ a+b two layers › permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit › permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit › permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit 0.70 62.0 4.49e-01 98.8% 82.2%
4682556 304.162.1.1 ↗ a+b two layers › Alpha-beta plaits › Competence or damage-inducible protein CinA middle domain › Competence or damage-inducible protein CinA middle domain › CinA_KH 0.69 48.0 4.87e-01 74.1% 72.5%
4438356 304.162.1.0 ↗ a+b two layers › Alpha-beta plaits › Competence or damage-inducible protein CinA middle domain › Competence or damage-inducible protein CinA middle domain 0.69 48.0 4.98e-01 72.8% 77.3%
3970035 225.1.1.0 ↗ a+b two layers › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase-like › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 0.69 56.0 4.85e-01 88.9% 97.6%
3324457 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.68 61.0 3.72e-01 98.8% 40.8%
3726634 327.11.2.0 ↗ a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) 0.67 53.0 5.36e-01 87.7% 85.0%
5046200 304.123.1.1 ↗ a+b two layers › Alpha-beta plaits › PF0523-like › PF0523-like › CGI-121 0.67 54.0 4.05e-01 87.7% 63.1%
3372798 304.8.1.45 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › bHLH-TF_ACT-like_plant 0.66 53.0 5.30e-01 88.9% 82.4%
3981185 241.1.1.25 ↗ a+b two layers › Type III secretory system chaperone-like › Type III secretory system chaperone › Type III secretory system chaperone › PF27378 0.66 57.0 5.08e-01 95.1% 79.1%
1954213 241.1.1.6 ↗ a+b two layers › Type III secretory system chaperone-like › Type III secretory system chaperone › Type III secretory system chaperone › YbjN 0.65 57.0 4.79e-01 100.0% 68.3%
3308135 304.8.1.0 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.65 53.0 5.11e-01 87.7% 78.9%
3987968 225.1.1.3 ↗ a+b two layers › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase-like › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › HATPase_c 0.64 55.0 4.72e-01 95.1% 79.2%
3995219 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.64 55.0 4.58e-01 98.8% 76.7%
3789606 4014.1.1.0 ↗ a+b two layers › a+b domain in type II DNA topoisomerase › a+b domain in type II DNA topoisomerase › a+b domain in type II DNA topoisomerase 0.64 52.0 4.07e-01 88.9% 43.5%
3317802 304.8.1.45 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › bHLH-TF_ACT-like_plant 0.63 51.0 4.90e-01 88.9% 77.9%
3312923 304.8.1.0 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.63 52.0 4.92e-01 88.9% 76.8%
3365684 306.6.1.0 ↗ a+b two layers › Glucose permease domain IIB-like › PH0987 N-terminal domain-like › PH0987 N-terminal domain-like 0.63 57.0 5.34e-01 98.8% 86.0%
4808059 109.28.1.1 ↗ alpha superhelices › Repetitive alpha hairpins › EssB extracellular domain › EssB extracellular domain › YukC 0.63 52.0 3.83e-01 97.5% 34.3%
3829402 304.8.1.0 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.63 50.0 5.08e-01 87.7% 86.3%
3528892 11.1.1.179 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig_3 0.63 50.0 3.54e-01 88.9% 28.0%
3705552 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.63 54.0 4.24e-01 93.8% 76.4%
3822278 304.8.1.0 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.62 50.0 4.93e-01 86.4% 82.4%
None — 0.62 55.0 4.48e-01 98.8% 88.8%
3382396 304.8.1.0 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.62 50.0 4.96e-01 87.7% 84.7%
3602267 881.3.1.0 ↗ a+b three layers › Mog1p/PsbP-like › Outer membrane-associated lipoprotein TP0453 › Outer membrane-associated lipoprotein TP0453 0.62 54.0 3.99e-01 100.0% 40.9%
5054060 310.3.1.0 ↗ a+b two layers › RRF/tRNA synthetase additional domain-like › General secretion pathway protein M (EpsM) periplasmic domain-related › General secretion pathway protein M (EpsM) periplasmic domain-related 0.62 50.0 4.94e-01 88.9% 100.0%
5075416 242.1.1.7 ↗ a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_3 0.62 50.0 4.59e-01 93.8% 66.4%
3425342 304.8.1.0 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.61 43.0 4.44e-01 72.8% 80.0%
3643150 304.8.1.0 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.61 49.0 4.85e-01 87.7% 83.5%
4015844 5089.1.1.0 ↗ beta complex topology › Membrane attack complex/perforin (MACPF) and cholesterol-dependent cytolysin (CDC) domains › Membrane attack complex/perforin (MACPF) and cholesterol-dependent cytolysin (CDC) domains › Membrane attack complex/perforin (MACPF) and cholesterol-dependent cytolysin (CDC) domains 0.61 54.0 3.94e-01 100.0% 65.3%
5077304 310.3.1.0 ↗ a+b two layers › RRF/tRNA synthetase additional domain-like › General secretion pathway protein M (EpsM) periplasmic domain-related › General secretion pathway protein M (EpsM) periplasmic domain-related 0.61 48.0 4.99e-01 85.2% 96.0%
3581781 11.1.1.97 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › I-set 0.60 48.0 4.63e-01 87.7% 74.7%
3873815 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.60 48.0 4.09e-01 88.9% 52.6%
3412686 11.1.1.179 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig_3 0.60 48.0 3.95e-01 87.7% 51.3%
3365716 304.8.1.0 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.60 47.0 4.71e-01 86.4% 84.7%
4954535 310.3.1.0 ↗ a+b two layers › RRF/tRNA synthetase additional domain-like › General secretion pathway protein M (EpsM) periplasmic domain-related › General secretion pathway protein M (EpsM) periplasmic domain-related 0.60 51.0 4.91e-01 96.3% 93.7%
3936485 11.1.1.97 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › I-set 0.60 49.0 4.57e-01 88.9% 73.0%
4958905 241.5.1.2 ↗ a+b two layers › Type III secretory system chaperone-like › DNA-binding C-terminal domain of the transcription factor MotA › DNA-binding C-terminal domain of the transcription factor MotA › DUF1529 0.60 50.0 4.50e-01 96.3% 79.8%
4078130 207.11.1.1 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Urease accessory protein ureH › Urease accessory protein ureH › UreD 0.59 52.0 3.70e-01 100.0% 60.0%
3666529 304.8.1.0 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.59 41.0 4.11e-01 74.1% 84.7%
3862603 11.1.1.363 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › C2-set_3 0.59 47.0 4.50e-01 87.7% 74.7%
3817811 304.8.1.0 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.59 47.0 4.64e-01 88.9% 82.4%
3288000 305.1.1.7 ↗ a+b two layers › DCoH-like › RBP11-like subunits of RNA polymerase › RBP11-like subunits of RNA polymerase › GDH_ACT2 0.59 53.0 4.96e-01 100.0% 83.0%
3934399 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.59 46.0 4.40e-01 88.9% 90.0%
5005970 304.51.1.15 ↗ a+b two layers › Alpha-beta plaits › CRISPR transcript (pre-crRNA) processing endoribonuclease-related › CRISPR transcript (pre-crRNA) processing endoribonuclease-related › Cmr1_C 0.59 43.0 3.73e-01 77.8% 89.1%
3242222 206.1.1.1 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.59 51.0 3.44e-01 100.0% 91.6%
3302370 304.8.1.0 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.59 45.0 4.53e-01 88.9% 81.9%
3456962 304.8.1.45 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › bHLH-TF_ACT-like_plant 0.59 47.0 4.67e-01 88.9% 84.5%
3501969 206.1.1.1 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.59 52.0 3.49e-01 100.0% 44.0%
3434168 304.8.1.45 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › bHLH-TF_ACT-like_plant 0.59 52.0 4.76e-01 98.8% 87.6%
3426902 304.8.1.0 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.58 51.0 4.91e-01 98.8% 89.5%
3998667 4014.1.1.1 ↗ a+b two layers › a+b domain in type II DNA topoisomerase › a+b domain in type II DNA topoisomerase › a+b domain in type II DNA topoisomerase › DNA_topoisoIV 0.58 46.0 3.61e-01 90.1% 47.2%
4219565 207.11.1.1 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Urease accessory protein ureH › Urease accessory protein ureH › UreD 0.58 51.0 3.58e-01 100.0% 57.8%
3965787 304.8.1.53 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › GlnD_5th 0.58 52.0 4.23e-01 100.0% 57.3%
3175120 242.1.1.2 ↗ a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_2 0.58 48.0 4.40e-01 93.8% 80.0%
3252384 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.58 46.0 4.21e-01 87.7% 66.4%
1211839 242.1.1.7 ↗ a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_3 0.58 48.0 4.63e-01 93.8% 83.3%
3384789 304.8.1.45 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › bHLH-TF_ACT-like_plant 0.57 50.0 4.60e-01 100.0% 86.4%
4317294 207.11.1.1 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Urease accessory protein ureH › Urease accessory protein ureH › UreD 0.57 50.0 3.55e-01 100.0% 59.2%
5028136 242.1.1.7 ↗ a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_3 0.57 46.0 4.14e-01 88.9% 78.3%
3415021 11.1.1.108 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › C2-set_2 0.57 46.0 4.38e-01 87.7% 96.8%
3666577 304.8.1.45 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › bHLH-TF_ACT-like_plant 0.57 50.0 4.69e-01 98.8% 85.9%
3305434 304.8.1.0 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.57 49.0 4.82e-01 98.8% 91.1%
4205746 242.1.1.5 ↗ a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › WhiA_N 0.57 48.0 4.45e-01 93.8% 74.3%
5030026 242.1.1.7 ↗ a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_3 0.56 46.0 4.46e-01 93.8% 81.1%
3993345 11.1.1.179 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig_3 0.56 50.0 4.67e-01 97.5% 90.0%
5065537 12.1.1.35 ↗ beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain › Melibiase_C 0.56 47.0 4.61e-01 91.4% 100.0%
3675774 304.8.1.45 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › bHLH-TF_ACT-like_plant 0.56 44.0 4.42e-01 87.7% 83.5%
3367405 304.8.1.45 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › bHLH-TF_ACT-like_plant 0.56 48.0 4.45e-01 100.0% 83.6%
3810458 304.8.1.0 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.55 48.0 4.60e-01 98.8% 89.5%
3321864 304.8.1.0 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.55 48.0 4.41e-01 100.0% 79.1%
3311358 304.8.1.67 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › DUF7377 0.55 49.0 4.21e-01 100.0% 65.4%
4245606 304.8.1.98 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › GDH_ACT3 0.55 51.0 4.04e-01 100.0% 70.3%
5028135 242.1.1.0 ↗ a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases 0.55 43.0 3.94e-01 88.9% 67.0%
3626360 11.1.1.97 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › I-set 0.55 49.0 4.41e-01 97.5% 80.9%
3345971 319.1.1.0 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones 0.55 44.0 4.13e-01 87.7% 90.0%
4328537 812.1.1.1 ↗ a+b duplicates or obligate multimers › MinE-like › Cell division protein MinE topological specificity domain › Cell division protein MinE topological specificity domain › MinE 0.55 46.0 4.53e-01 93.8% 95.3%
3678892 304.8.1.2 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT 0.55 45.0 4.59e-01 91.4% 98.8%
5055324 4182.1.1.0 ↗ beta sandwiches › Agglutinin HPA-like › Agglutinin HPA-like › Agglutinin HPA-like 0.54 48.0 3.97e-01 98.8% 69.0%
3959682 304.8.1.0 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.54 45.0 4.68e-01 92.6% 100.0%
3970545 310.3.1.2 ↗ a+b two layers › RRF/tRNA synthetase additional domain-like › General secretion pathway protein M (EpsM) periplasmic domain-related › General secretion pathway protein M (EpsM) periplasmic domain-related › T2SSM 0.54 41.0 4.20e-01 85.2% 97.5%
3964190 310.3.1.3 ↗ a+b two layers › RRF/tRNA synthetase additional domain-like › General secretion pathway protein M (EpsM) periplasmic domain-related › General secretion pathway protein M (EpsM) periplasmic domain-related › PilN 0.53 44.0 3.51e-01 91.4% 46.7%
3228319 382.1.1.6 ↗ few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like › QVR 0.53 46.0 4.36e-01 95.1% 92.6%
5020101 873.1.1.0 ↗ a+b complex topology › H-NOX domain › H-NOX domain › H-NOX domain 0.53 44.0 3.48e-01 91.4% 48.8%
3306024 304.8.1.0 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.53 46.0 4.21e-01 98.8% 81.8%
3345132 304.8.1.45 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › bHLH-TF_ACT-like_plant 0.53 45.0 4.08e-01 97.5% 85.2%
5020277 873.1.1.0 ↗ a+b complex topology › H-NOX domain › H-NOX domain › H-NOX domain 0.52 42.0 3.32e-01 88.9% 48.8%
4022662 304.9.1.0 ↗ a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD 0.52 36.0 3.63e-01 75.3% 81.2%
286927 242.1.1.1 ↗ a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_1 0.52 43.0 3.70e-01 93.8% 61.2%
3813809 304.8.1.45 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › bHLH-TF_ACT-like_plant 0.50 43.0 4.08e-01 100.0% 86.0%
D2 medium residues 101-327
PDB
Domain cluster: rep: viral_capsid_associated_protein__YP_009118574__Condylorrhiza_vestigialis_MNPV__1592576__D118-160_199-378
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF05789.17 best Baculo_VP1054 262.6 9.50e-78 99.6% 67.3%