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VP1054

Euk-Vir

Lonomia_obliqua_multiple_nucleopolyhedrovirus

VP1054__YP_009666450__Lonomia_obliqua_multiple_nucleopolyhedrovirus__134394

Identity

Accession:: YP_009666450 ↗
Protein ID:: VP1054
Kingdom:: euk

Quality

79.2 mean pLDDT

Taxonomy

Naldaviricetes› Lefavirales› Baculoviridae› Alphabaculovirus› Lonomia_obliqua_multiple_nucleopolyhedrovirus

TaxID: 134394

Cluster

View cluster (46 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 28-124

PDB

Domain cluster: rep: hypothetical_protein__YP_007250462__Thysanoplusia_orichalcea_nucleopolyhedrovirus__101850__D27-120

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF05789.17 best	Baculo_VP1054	91.9	8.10e-26	100.0%	29.3%

D2 medium residues 125-183_195-208

PDB

Domain cluster: representative

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF05789.17 best	Baculo_VP1054	63.4	3.80e-17	100.0%	19.1%

CATH (5)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2azeB00	6.10.250.540	Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces ›	0.63	32.0	2.85e-01	80.8%	35.6%
3jafA01	2.70.170.10	Mainly Beta › Distorted Sandwich › Acetylcholine Binding Protein; Chain: A, › Neurotransmitter-gated ion-channel ligand-binding domain	0.57	45.0	3.28e-01	89.0%	96.2%
4c98A02	3.30.70.1900	Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits ›	0.53	37.0	3.12e-01	74.0%	63.5%
3sw0X01	2.10.70.10	Mainly Beta › Ribbon › Complement Module; domain 1 › Complement Module, domain 1	0.52	30.0	3.26e-01	79.5%	67.8%
4mybA00	3.90.550.10	Alpha Beta › Alpha-Beta Complex › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A	0.51	36.0	2.65e-01	76.7%	99.1%

ECOD (11)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3567388	4154.1.1.2 ↗	beta duplicates or obligate multimers › E2F-DP heterodimerization region › E2F-DP heterodimerization region › E2F-DP heterodimerization region › E2F_CC-MB	0.59	30.0	2.69e-01	100.0%	35.2%
3390006	2011.1.1.8 ↗	a/b three-layered sandwiches › Phosphorylase/hydrolase-like › Zn-dependent exopeptidases › Zn-dependent exopeptidases › Peptidase_M28	0.57	39.0	2.53e-01	71.2%	30.3%
5073159	512.1.1.1 ↗	a+b two layers › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › PmbA_TldD_1st	0.56	38.0	3.52e-01	71.2%	95.8%
4216798	149.1.1.1 ↗	alpha arrays › Cytochrome P450 › Cytochrome P450 › Cytochrome P450 › p450	0.55	41.0	2.52e-01	80.8%	89.5%
4532011	149.1.1.1 ↗	alpha arrays › Cytochrome P450 › Cytochrome P450 › Cytochrome P450 › p450	0.55	41.0	2.53e-01	80.8%	89.1%
4268079	149.1.1.1 ↗	alpha arrays › Cytochrome P450 › Cytochrome P450 › Cytochrome P450 › p450	0.55	41.0	2.49e-01	80.8%	86.9%
4061006	149.1.1.1 ↗	alpha arrays › Cytochrome P450 › Cytochrome P450 › Cytochrome P450 › p450	0.55	40.0	2.48e-01	80.8%	88.3%
4979863	512.1.1.1 ↗	a+b two layers › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › PmbA_TldD_1st	0.53	36.0	3.42e-01	71.2%	100.0%
3728080	298.1.1.0 ↗	a+b two layers › FwdE/GAPDH domain-like › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain	0.52	41.0	3.08e-01	84.9%	56.7%
None	—		0.52	36.0	2.29e-01	74.0%	40.6%
4168202	101.17.1.0 ↗	alpha arrays › HTH › IHF-like DNA-binding proteins › IHF-like DNA-binding proteins	0.51	31.0	2.89e-01	80.8%	45.2%

D3 medium residues 209-320_339-367

PDB

Domain cluster: rep: VP1054__YP_009249975__Mocis_latipes_granulovirus__2072024__D164-319

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF05789.17 best	Baculo_VP1054	231.7	2.40e-68	97.2%	44.1%