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VP1
Euk-VirTorque_teno_virus_1
VP1__NP_817122__Torque_teno_virus_1__687340
Identity
- Accession:
- NP_817122 ↗
- Protein ID:
- VP1
- Kingdom:
- euk
Quality
71.0
mean pLDDT
Taxonomy
Shotokuvirae›
Commensaviricota›
Cardeaviricetes›
Sanitavirales›
Anelloviridae›
Alphatorquevirus›
Torque_teno_virus_1
TaxID: 687340
Cluster
View cluster (37 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 160-211_238-259_566-591
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF02956.21 best | TT_ORF1 | 59.4 | 4.10e-16 | 54.0% | 9.9% |
CATH (9)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1ng0C00 | 2.60.120.20 | Mainly Beta › Sandwich › Jelly Rolls › | 0.58 | 52.0 | 4.06e-01 | 100.0% | 60.1% |
| 2y26A01 | 2.60.120.20 | Mainly Beta › Sandwich › Jelly Rolls › | 0.58 | 50.0 | 3.51e-01 | 97.0% | 31.0% |
| 5yl1A01 | 2.60.120.20 | Mainly Beta › Sandwich › Jelly Rolls › | 0.58 | 50.0 | 4.17e-01 | 98.0% | 66.3% |
| 1cwpA00 | 2.60.120.220 | Mainly Beta › Sandwich › Jelly Rolls › Satellite virus coat domain | 0.56 | 46.0 | 4.04e-01 | 96.0% | 59.7% |
| 8b38A01 | 2.60.120.20 | Mainly Beta › Sandwich › Jelly Rolls › | 0.53 | 46.0 | 3.57e-01 | 96.0% | 58.4% |
| 5jzgA00 | 2.60.120.20 | Mainly Beta › Sandwich › Jelly Rolls › | 0.53 | 46.0 | 3.60e-01 | 98.0% | 51.3% |
| 7alkA01 | 2.60.40.3510 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.52 | 44.0 | 3.85e-01 | 95.0% | 97.5% |
| 4xl1E01 | 2.60.40.3510 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.51 | 42.0 | 3.74e-01 | 95.0% | 97.4% |
| 5mw5A01 | 2.60.40.3510 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.51 | 42.0 | 3.75e-01 | 94.0% | 98.7% |
ECOD (3)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2589532 | 10.2.1.0 ↗ | beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) | 0.59 | 52.0 | 4.22e-01 | 99.0% | 61.3% |
| 3274470 | 11.2.1.1 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › C2 | 0.54 | 47.0 | 3.91e-01 | 97.0% | 86.1% |
| 3606546 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.53 | 38.0 | 2.36e-01 | 76.0% | 28.9% |
D2
medium
residues 260-282_429-565
Domain cluster:
rep: ORF1__YP_009505738__Torque_teno_mini_virus_11__2065037__D379-509
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF02956.21 best | TT_ORF1 | 185.1 | 3.20e-54 | 100.0% | 28.8% |
D3
medium
residues 283-428