←Back to structures
VP1
Euk-VirPiliocolobus_rufomitratus_polyomavirus_1
VP1__YP_007195257__Piliocolobus_rufomitratus_polyomavirus_1__1236407
Identity
- Accession:
- YP_007195257 ↗
- Protein ID:
- VP1
- Kingdom:
- euk
Quality
70.1
mean pLDDT
Taxonomy
Shotokuvirae›
Cossaviricota›
Papovaviricetes›
Sepolyvirales›
Polyomaviridae›
Alphapolyomavirus›
Piliocolobus_rufomitratus_polyomavirus_1
TaxID: 1236407
Cluster
View cluster (117 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 40-77_104-146_293-362
Domain cluster:
rep: VP1__YP_009551976__Tupaia_glis_polyomavirus_1__2170402__D33-54_101-134_245-326
Pfam (3)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00718.29 best | Polyoma_coat | 59.4 | 4.50e-16 | 35.8% | 15.5% |
| PF00718.29 | Polyoma_coat | 67.2 | 1.90e-18 | 35.1% | 16.6% |
| PF00718.29 | Polyoma_coat | 33.7 | 2.90e-08 | 26.5% | 12.2% |
D2
medium
residues 78-103_147-292
Domain cluster:
rep: major_structural_protein_VP1__YP_007346983__Otomops_polyomavirus_KY157__2035999__D87-106_144-241_279-300
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00718.29 best | Polyoma_coat | 207.4 | 3.50e-61 | 94.8% | 46.3% |
CATH (3)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1sidF00 | 2.60.175.10 | Mainly Beta › Sandwich › Polyomavirus Vp1; Chain A › Capsid protein VP1,Polyomavirus | 0.84 | 81.0 | 6.15e-01 | 100.0% | 60.2% |
| 3s7vC00 | 2.60.175.10 | Mainly Beta › Sandwich › Polyomavirus Vp1; Chain A › Capsid protein VP1,Polyomavirus | 0.79 | 76.0 | 6.38e-01 | 100.0% | 75.7% |
| 3l5iA02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.54 | 20.0 | 2.75e-01 | 81.4% | 62.5% |
ECOD (4)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2666438 | 10.2.1.6 ↗ | beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Polyoma_coat | 0.85 | 82.0 | 6.30e-01 | 100.0% | 62.6% |
| 961478 | 10.2.1.6 ↗ | beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Polyoma_coat | 0.84 | 82.0 | 6.99e-01 | 100.0% | 80.2% |
| 423236 | 10.2.1.6 ↗ | beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Polyoma_coat | 0.79 | 76.0 | 6.39e-01 | 100.0% | 74.1% |
| 4944280 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.51 | 22.0 | 2.71e-01 | 81.4% | 59.1% |