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VP1
Euk-VirNew_Jersey_polyomavirus-2013
VP1__YP_009030020__New_Jersey_polyomavirus-2013__1497391
Identity
- Accession:
- YP_009030020 ↗
- Protein ID:
- VP1
- Kingdom:
- euk
Quality
70.6
mean pLDDT
Taxonomy
Shotokuvirae›
Cossaviricota›
Papovaviricetes›
Sepolyvirales›
Polyomaviridae›
Alphapolyomavirus›
New_Jersey_polyomavirus-2013
TaxID: 1497391
Cluster
View cluster (117 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 28-85_103-120
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00718.29 best | Polyoma_coat | 55.5 | 6.70e-15 | 73.7% | 16.9% |
D2
medium
residues 86-102_152-364
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00718.29 best | Polyoma_coat | 299.7 | 2.80e-89 | 90.9% | 64.5% |
CATH (2)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1sidF00 | 2.60.175.10 | Mainly Beta › Sandwich › Polyomavirus Vp1; Chain A › Capsid protein VP1,Polyomavirus | 0.87 | 73.0 | 6.15e-01 | 86.5% | 69.5% |
| 3s7vC00 | 2.60.175.10 | Mainly Beta › Sandwich › Polyomavirus Vp1; Chain A › Capsid protein VP1,Polyomavirus | 0.80 | 65.0 | 6.09e-01 | 82.2% | 80.6% |
ECOD (4)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2666438 | 10.2.1.6 ↗ | beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Polyoma_coat | 0.86 | 75.0 | 6.36e-01 | 88.3% | 73.5% |
| 961478 | 10.2.1.6 ↗ | beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Polyoma_coat | 0.86 | 63.0 | 6.08e-01 | 74.3% | 81.0% |
| 423236 | 10.2.1.6 ↗ | beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Polyoma_coat | 0.80 | 65.0 | 6.11e-01 | 82.2% | 78.9% |
| 5084067 | 10.1.2.0 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) | 0.53 | 22.0 | 3.43e-01 | 76.1% | 93.7% |