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VP1
Euk-VirTadarida_brasiliensis_polyomavirus_2
VP1__YP_009113099__Tadarida_brasiliensis_polyomavirus_2__1588049
Identity
- Accession:
- YP_009113099 ↗
- Protein ID:
- VP1
- Kingdom:
- euk
Quality
78.1
mean pLDDT
Taxonomy
Shotokuvirae›
Cossaviricota›
Papovaviricetes›
Sepolyvirales›
Polyomaviridae›
Tadarida_brasiliensis_polyomavirus_2
TaxID: 1588049
Cluster
View cluster (117 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 40-139_171-291_320-391
Domain cluster:
rep: VP1__YP_009325930__Betapolyomavirus_securanorvegicus__1919247__D30-309
Pfam (3)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00718.29 best | Polyoma_coat | 160.4 | 7.40e-47 | 42.0% | 37.2% |
| PF00718.29 | Polyoma_coat | 128.9 | 2.80e-37 | 34.1% | 32.1% |
| PF00718.29 | Polyoma_coat | 31.3 | 1.60e-07 | 10.2% | 9.8% |
D2
medium
residues 140-170_292-319
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00718.29 best | Polyoma_coat | 29.7 | 4.90e-07 | 50.8% | 9.8% |
CATH (3)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1vq8A01 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.56 | 35.0 | 3.24e-01 | 79.7% | 46.2% |
| 3kbhE00 | 2.60.40.3130 | Mainly Beta › Sandwich › Immunoglobulin-like › Coronavirus S1 glycoprotein, central receptor binding domain (RBD) | 0.52 | 41.0 | 3.53e-01 | 96.6% | 95.5% |
| 4dapA02 | 3.40.1350.60 | Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › | 0.51 | 44.0 | 3.32e-01 | 98.3% | 40.8% |