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VP1

Euk-Vir

Lutzomyia_reovirus_1

VP1__YP_009158918__Lutzomyia_reovirus_1__1670669

Identity

Accession:
YP_009158918 ↗
Protein ID:
VP1
Kingdom:
euk

Quality

76.8 mean pLDDT

Cluster

View cluster (8 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 794-934
PDB
Domain cluster: representative
CATH (5)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2k85A00 1.10.10.440 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › FF domain 0.59 29.0 4.02e-01 79.4% 100.0%
1u84A00 1.10.340.20 Mainly Alpha › Orthogonal Bundle › Endonuclease III; domain 1 › Apc36109-like domain 0.57 27.0 3.45e-01 77.3% 76.5%
1ybzA00 1.20.59.10 Mainly Alpha › Up-down Bundle › Chorismate Mutase Domain, subunit A › Chorismate mutase 0.54 29.0 3.90e-01 96.5% 97.4%
1r4gA00 1.10.8.10 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain 0.53 20.0 3.12e-01 80.9% 88.7%
4pswA03 1.10.10.390 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.52 21.0 3.36e-01 85.1% 100.0%
ECOD (4)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
2494150 4064.1.1.6 ↗ a+b complex topology › Inner layer core protein p3-related › Inner layer core protein p3-related › Inner layer core protein p3-related › VP1-like_C 0.83 78.0 4.49e-01 100.0% 13.0%
3716897 183.1.1.0 ↗ alpha duplicates or obligate multimers › Iron-dependent repressor protein, dimerization domain › Iron-dependent repressor protein, dimerization domain › Iron-dependent repressor protein, dimerization domain 0.65 32.0 4.16e-01 92.9% 86.7%
5041226 604.16.1.0 ↗ alpha bundles › Spectrin repeat-like › Hypothetical membrane protein Ta0354, soluble domain › Hypothetical membrane protein Ta0354, soluble domain 0.63 28.0 3.89e-01 93.6% 87.7%
4494528 632.2.1.40 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › Bacterial immunoglobulin/albumin-binding domains › Bacterial immunoglobulin/albumin-binding domains › DUF515 0.55 21.0 3.39e-01 80.9% 90.9%
D2 high residues 937-1107
PDB
Domain cluster: rep: VP3__YP_001837096__American_grass_carp_reovirus__465447__D979-1148
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF21416.3 best VP1-like_C 42.9 7.20e-11 46.2% 57.0%
CATH (2)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3nkdA01 3.100.10.20 Alpha Beta › Ribosomal Protein L15; Chain: K; domain 2 › Ribosomal Protein L15; Chain: K; domain 2 › CRISPR-associated endonuclease Cas1, N-terminal domain 0.53 27.0 3.65e-01 80.7% 96.4%
4w8kA01 3.100.10.20 Alpha Beta › Ribosomal Protein L15; Chain: K; domain 2 › Ribosomal Protein L15; Chain: K; domain 2 › CRISPR-associated endonuclease Cas1, N-terminal domain 0.52 26.0 3.44e-01 80.7% 89.0%
ECOD (3)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
2494150 4064.1.1.6 ↗ a+b complex topology › Inner layer core protein p3-related › Inner layer core protein p3-related › Inner layer core protein p3-related › VP1-like_C 0.88 84.0 4.94e-01 100.0% 15.1%
1409638 4064.1.1.1 ↗ a+b complex topology › Inner layer core protein p3-related › Inner layer core protein p3-related › Inner layer core protein p3-related › Orbi_VP3 0.66 56.0 3.46e-01 100.0% 17.2%
2589759 4064.1.1.2 ↗ a+b complex topology › Inner layer core protein p3-related › Inner layer core protein p3-related › Inner layer core protein p3-related › Rota_VP2 0.62 47.0 3.00e-01 98.8% 16.2%
D3 medium residues 274-369_1128-1188
PDB
Domain cluster: representative
CATH (5)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3htrA00 2.30.30.240 Mainly Beta › Roll › SH3 type barrels. › PRC-barrel domain 0.66 24.0 3.05e-01 79.0% 52.0%
1ej6B00 3.90.1830.10 Alpha Beta › Alpha-Beta Complex › Inner capsid protein lambda-1 › Inner capsid protein lambda-1 0.63 56.0 3.39e-01 96.2% 86.8%
3hjlA03 1.20.5.2020 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.55 16.0 3.27e-01 73.9% 100.0%
2mdrA00 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.55 21.0 2.67e-01 78.3% 53.2%
3uswA02 1.20.5.2020 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.54 16.0 3.11e-01 82.8% 97.6%
ECOD (7)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3993946 4.8.1.0 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.81 21.0 4.43e-01 74.5% 92.5%
4982621 4.6.1.2 ↗ beta barrels › SH3 › PRC-barrel domain › PRC-barrel domain › PRC 0.67 27.0 3.51e-01 79.6% 64.5%
2992478 4064.1.1.7 ↗ a+b complex topology › Inner layer core protein p3-related › Inner layer core protein p3-related › Inner layer core protein p3-related › Lamba1_VP3 0.62 55.0 3.32e-01 95.5% 83.4%
3383138 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.61 19.0 2.73e-01 75.8% 53.8%
5081136 4.6.1.2 ↗ beta barrels › SH3 › PRC-barrel domain › PRC-barrel domain › PRC 0.61 25.0 3.20e-01 79.6% 64.2%
3593659 59.1.1.0 ↗ beta complex topology › triple barrel › triple barrel › Rap30/74 interaction domains-like 0.51 28.0 2.68e-01 80.3% 41.5%
3341750 708.1.1.8 ↗ beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain › FAR1 0.50 26.0 2.96e-01 80.3% 65.2%