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VP1
Euk-VirRat_bocavirus
VP1__YP_009227293__Rat_bocavirus__1788315
Identity
- Accession:
- YP_009227293 ↗
- Protein ID:
- VP1
- Kingdom:
- euk
Quality
68.0
mean pLDDT
Taxonomy
Shotokuvirae›
Cossaviricota›
Quintoviricetes›
Piccovirales›
Parvoviridae›
Bocaparvovirus›
Rat_bocavirus
TaxID: 1788315
Cluster
View cluster (92 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 190-394_579-691
Domain cluster:
rep: VP2__YP_009508801__Miniopterus_schreibersii_bat_bocavirus__1911554__D51-253_470-529
Pfam (2)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00740.24 best | VP1_2 | 139.8 | 1.50e-40 | 66.0% | 39.8% |
| PF00740.24 | VP1_2 | 38.1 | 1.00e-09 | 30.2% | 15.4% |
D2
medium
residues 7-92
Domain cluster:
rep: capsid_protein_VP1__YP_009508795__Bat_bocavirus_XM30__2259811__D8-95
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF08398.16 best | Phospholip_A2_4 | 88.0 | 5.50e-25 | 93.0% | 100.0% |
D3
medium
residues 424-443_528-578