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VP1
Euk-VirNorovirus_GIV
VP1__YP_009237904__Norovirus_GIV__262897
Identity
- Accession:
- YP_009237904 ↗
- Protein ID:
- VP1
- Kingdom:
- euk
Quality
81.2
mean pLDDT
Taxonomy
Orthornavirae›
Pisuviricota›
Pisoniviricetes›
Picornavirales›
Caliciviridae›
Norovirus›
Norovirus_GIV
TaxID: 262897
Cluster
View cluster (17 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 50-215
Domain cluster:
rep: structural_polyprotein__YP_009333175__Bastrovirus-like_virus_VietNam_Bat_17819_21__1906170__D141-305
Pfam (2)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00915.27 best | Calici_coat | 203.9 | 3.60e-60 | 100.0% | 55.1% |
| PF00073.27 | Rhv | 52.6 | 6.10e-14 | 79.5% | 59.1% |
D2
medium
residues 235-279_418-542
Domain cluster:
rep: VP1__YP_009679035__Norovirus_GII_Hu_JP_2007_GII.P15_GII.15_Sapporo_HK299__1529918__D230-281_420-543
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF08435.18 best | Calici_coat_C | 167.8 | 4.10e-49 | 90.6% | 53.5% |
D3
medium
residues 280-417
Domain cluster:
rep: VP1_capsid_protein__YP_009679041__Norovirus_dog_GVI.1_HKU_Ca026F_2007_HKG__673457__D281-384
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF08435.18 best | Calici_coat_C | 40.6 | 3.10e-10 | 74.6% | 42.6% |