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VP1

Euk-Vir

Orbivirus_SX-2017a

VP1__YP_009345879__Orbivirus_SX-2017a__1955493

Identity

Accession:
YP_009345879 ↗
Protein ID:
VP1
Kingdom:
euk

Quality

87.9 mean pLDDT

Cluster

View cluster (29 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 658-717
PDB
Domain cluster: rep: VP1_protein__YP_009507680__Corriparta_virus__40053__D646-703
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF05788.19 best Orbi_VP1 55.4 3.10e-15 100.0% 4.7%
D2 medium residues 1-67_903-921
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF05788.19 best Orbi_VP1 47.6 6.70e-13 73.3% 4.8%
CATH (5)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3c8cB01 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.65 30.0 2.65e-01 98.8% 29.1%
3iylW04 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.56 39.0 2.90e-01 74.4% 52.8%
1xb2B02 3.30.479.20 Alpha Beta › 2-Layer Sandwich › Tetrahydropterin Synthase; Chain A › Elongation factor Ts, dimerisation domain 0.54 34.0 3.06e-01 98.8% 46.3%
2k73A00 1.20.1550.10 Mainly Alpha › Up-down Bundle › Bromodomain-like › DsbB-like 0.52 44.0 3.53e-01 96.5% 88.5%
1wtuA00 4.10.520.10 Few Secondary Structures › Irregular › HU Protein; Chain A › IHF-like DNA-binding proteins 0.51 33.0 3.16e-01 75.6% 54.5%
ECOD (3)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3264621 304.56.1.0 ↗ a+b two layers › Alpha-beta plaits › CRISPR associated protein Cas2-like › CRISPR associated protein Cas2-like 0.59 43.0 3.90e-01 75.6% 100.0%
4330176 872.3.1.1 ↗ a+b two layers › Dodecin subunit-like › YbjQ-like › YbjQ-like › YbjQ_1 0.58 30.0 2.75e-01 96.5% 38.9%
4003848 11.1.1.53 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › DOMON 0.52 38.0 3.00e-01 79.1% 42.6%
D3 medium residues 68-230
PDB
Domain cluster: rep: RNA-dependent_RNA_polymerase__YP_009047258__Umatilla_virus__40060__D70-244_849-867
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF05788.19 best Orbi_VP1 211.3 2.60e-62 100.0% 12.4%
D4 medium residues 231-274_309-342
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF05788.19 best Orbi_VP1 82.9 1.50e-23 62.8% 3.5%
CATH (58)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1nt2B02 1.10.287.660 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.76 52.0 5.62e-01 70.5% 83.6%
1fs0G02 1.10.287.80 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ATP synthase, gamma subunit, helix hairpin domain 0.76 52.0 5.01e-01 71.8% 91.0%
4abmD00 1.10.287.1060 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like 0.75 51.0 5.20e-01 70.5% 75.3%
1cnt200 1.20.1250.10 Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › 0.75 52.0 4.35e-01 71.8% 69.2%
3r84A00 1.10.287.3490 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.75 51.0 5.07e-01 70.5% 76.5%
4dciA00 6.10.140.1110 Special › Helix non-globular › Helix Hairpins › 0.74 52.0 4.20e-01 73.1% 54.4%
1ydxA02 1.10.287.1120 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Bipartite methylase S protein 0.74 51.0 4.84e-01 70.5% 91.1%
4v1gA00 1.20.20.10 Mainly Alpha › Up-down Bundle › F1FO ATP Synthase › F1F0 ATP synthase subunit C 0.74 51.0 5.00e-01 71.8% 80.0%
2js5A00 1.10.287.660 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.74 51.0 5.35e-01 71.8% 93.0%
1cxzB00 1.10.287.160 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HR1 repeat 0.74 50.0 4.89e-01 70.5% 70.9%
2ic6A00 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.73 51.0 5.35e-01 71.8% 98.6%
4aflA00 6.10.140.1740 Special › Helix non-globular › Helix Hairpins › 0.73 51.0 4.70e-01 73.1% 57.8%
1fpoC02 1.20.1280.20 Mainly Alpha › Up-down Bundle › Monooxygenase › HscB, C-terminal domain 0.73 50.0 4.76e-01 70.5% 64.8%
3na7A00 1.10.287.1490 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.73 51.0 3.62e-01 73.1% 29.5%
3fd9A03 1.10.287.1060 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like 0.72 50.0 5.16e-01 71.8% 79.5%
4ijjB00 1.20.120.910 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › DksA, coiled-coil domain 0.72 50.0 4.19e-01 71.8% 54.6%
1qdbA02 1.20.140.10 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 0.72 57.0 4.69e-01 85.9% 55.9%
4dylA02 1.10.287.160 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HR1 repeat 0.72 49.0 4.63e-01 70.5% 81.9%
6xj1A01 1.20.1270.60 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Arfaptin homology (AH) domain/BAR domain 0.72 49.0 3.42e-01 70.5% 38.4%
1ku9A02 1.10.287.450 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.72 49.0 5.30e-01 70.5% 90.6%
6r1nA01 1.10.287.40 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Serine-tRNA synthetase, tRNA binding domain 0.72 52.0 4.76e-01 76.9% 96.1%
4iggA01 1.10.287.160 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HR1 repeat 0.72 49.0 5.25e-01 71.8% 97.0%
3bvxA02 1.20.1270.50 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Glycoside hydrolase family 38, central domain 0.71 55.0 4.90e-01 83.3% 66.7%
2mtqA00 1.20.58.130 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.71 45.0 4.65e-01 70.5% 68.5%
2qe7G01 1.10.287.80 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ATP synthase, gamma subunit, helix hairpin domain 0.70 48.0 4.48e-01 70.5% 69.1%
2dq0A01 1.10.287.40 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Serine-tRNA synthetase, tRNA binding domain 0.70 51.0 4.61e-01 76.9% 96.3%
2e9xA01 1.20.58.1030 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.70 48.0 4.09e-01 71.8% 44.5%
3tulB00 1.20.120.330 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Nucleotidyltransferases domain 2 0.70 57.0 4.86e-01 92.3% 91.0%
1z0pA00 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.69 48.0 4.96e-01 71.8% 84.9%
6vq6G02 1.20.1460.10 Mainly Alpha › Up-down Bundle › subunit c (vma5p) of the yeast v-atpase, domain 2 › subunit c (vma5p) of the yeast v-atpase, domain 2 0.69 50.0 3.81e-01 76.9% 62.0%
4iggB02 1.20.120.230 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like 0.69 59.0 5.15e-01 96.2% 73.6%
2p4vA01 1.10.287.180 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Transcription elongation factor, GreA/GreB, N-terminal domain 0.69 45.0 4.58e-01 70.5% 68.4%
1wp7A00 1.10.287.770 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › YojJ-like 0.68 47.0 5.06e-01 70.5% 90.6%
2ld7B00 1.20.1160.11 Mainly Alpha › Up-down Bundle › Paired amphipathic helix 2 (pah2 repeat) › Paired amphipathic helix 0.68 46.0 4.74e-01 89.7% 73.3%
1u7lA02 1.20.1460.10 Mainly Alpha › Up-down Bundle › subunit c (vma5p) of the yeast v-atpase, domain 2 › subunit c (vma5p) of the yeast v-atpase, domain 2 0.68 49.0 3.74e-01 76.9% 87.4%
3lssA01 1.10.287.40 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Serine-tRNA synthetase, tRNA binding domain 0.67 48.0 4.28e-01 75.6% 89.3%
1m62A00 1.20.58.120 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › BAG domain 0.67 48.0 4.62e-01 74.4% 69.0%
4h63H01 1.20.58.1710 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.67 46.0 4.79e-01 71.8% 93.1%
6h9xA01 1.10.287.40 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Serine-tRNA synthetase, tRNA binding domain 0.67 50.0 4.57e-01 79.5% 96.1%
3o39A00 1.20.120.1490 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › 0.66 47.0 4.41e-01 74.4% 81.2%
2wgmA01 1.20.20.10 Mainly Alpha › Up-down Bundle › F1FO ATP Synthase › F1F0 ATP synthase subunit C 0.66 45.0 4.52e-01 71.8% 81.7%
3r84B00 6.10.280.160 Special › Helix non-globular › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Mediator of RNA polymerase II transcription subunit 22 0.65 46.0 4.58e-01 73.1% 71.2%
1wleA01 1.10.287.40 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Serine-tRNA synthetase, tRNA binding domain 0.65 49.0 4.34e-01 82.1% 99.1%
2e9xD01 1.20.58.1030 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.64 44.0 3.67e-01 71.8% 62.0%
1kyoF00 1.10.287.20 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Ubiquinol-cytochrome C reductase hinge domain 0.63 47.0 4.82e-01 79.5% 87.8%
1avoB00 1.20.120.180 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Proteasome activator pa28, C-terminal domain 0.63 54.0 4.46e-01 94.9% 84.3%
3qo8A01 1.10.287.40 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Serine-tRNA synthetase, tRNA binding domain 0.63 50.0 4.55e-01 87.2% 92.5%
2xokP00 1.20.20.10 Mainly Alpha › Up-down Bundle › F1FO ATP Synthase › F1F0 ATP synthase subunit C 0.63 43.0 4.46e-01 73.1% 82.4%
6qumQ00 1.20.20.10 Mainly Alpha › Up-down Bundle › F1FO ATP Synthase › F1F0 ATP synthase subunit C 0.62 43.0 4.45e-01 73.1% 86.5%
2uv8A07 6.10.140.1410 Special › Helix non-globular › Helix Hairpins › 0.61 44.0 4.32e-01 76.9% 69.4%
2vkzA02 3.40.47.10 Alpha Beta › 3-Layer(aba) Sandwich › Peroxisomal Thiolase; Chain A, domain 1 › Thiolase/Chalcone synthase 0.61 44.0 3.03e-01 76.9% 22.5%
1w0bA01 1.20.58.420 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › AHSP 0.58 41.0 3.96e-01 80.8% 64.1%
2p5tA00 1.10.8.130 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.57 48.0 4.58e-01 94.9% 85.9%
2wdqD00 1.20.1300.10 Mainly Alpha › Up-down Bundle › 3 helical TM bundles of succinate and fumarate reductases › Fumarate reductase/succinate dehydrogenase, transmembrane subunit 0.57 49.0 4.43e-01 94.9% 98.1%
2bl2A00 1.20.120.610 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › lithium bound rotor ring of v- atpase 0.57 47.0 3.78e-01 92.3% 64.1%
3vfzB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.57 39.0 4.31e-01 71.8% 95.2%
1zylA03 1.20.1270.170 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › 0.52 42.0 3.95e-01 93.6% 81.6%
1tj7A01 1.10.275.10 Mainly Alpha › Orthogonal Bundle › Fumarase C; Chain B, domain 1 › Fumarase/aspartase (N-terminal domain) 0.50 42.0 3.83e-01 93.6% 78.1%
ECOD (36)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4286197 605.1.1.1 ↗ alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › HisKA 0.79 57.0 5.68e-01 74.4% 86.3%
149872 3291.1.1.1 ↗ alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Snf7 0.75 51.0 5.12e-01 70.5% 88.6%
3699443 3755.3.1.0 ↗ alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin 0.75 55.0 4.82e-01 78.2% 98.3%
2799599 5041.1.1.1 ↗ extended segments › F1F0 ATP synthase subunit C › F1F0 ATP synthase subunit C › F1F0 ATP synthase subunit C › ATP-synt_C 0.74 51.0 4.99e-01 71.8% 79.1%
4961508 605.1.1.0 ↗ alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase 0.74 51.0 5.22e-01 71.8% 80.0%
3974364 605.1.1.4 ↗ alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › HisKA_3 0.73 50.0 4.98e-01 70.5% 78.8%
3392164 192.29.1.0 ↗ alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) 0.72 50.0 4.96e-01 70.5% 71.2%
3770414 604.1.1.0 ↗ alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.72 49.0 4.43e-01 70.5% 52.4%
4182116 192.1.1.2 ↗ alpha bundles › Long alpha-hairpin › GreA transcript cleavage protein, N-terminal domain › GreA transcript cleavage protein, N-terminal domain › GreA_GreB_N 0.72 49.0 4.77e-01 70.5% 70.6%
2893266 5041.1.1.1 ↗ extended segments › F1F0 ATP synthase subunit C › F1F0 ATP synthase subunit C › F1F0 ATP synthase subunit C › ATP-synt_C 0.72 49.0 4.69e-01 71.8% 68.5%
4109908 5041.1.1.1 ↗ extended segments › F1F0 ATP synthase subunit C › F1F0 ATP synthase subunit C › F1F0 ATP synthase subunit C › ATP-synt_C 0.72 49.0 4.82e-01 71.8% 80.0%
3470858 5041.1.1.1 ↗ extended segments › F1F0 ATP synthase subunit C › F1F0 ATP synthase subunit C › F1F0 ATP synthase subunit C › ATP-synt_C 0.71 48.0 4.52e-01 70.5% 66.3%
3788311 603.1.1.0 ↗ alpha bundles › STAT-like › t-snare proteins › t-snare proteins 0.71 49.0 4.30e-01 71.8% 71.3%
3693258 604.7.1.1 ↗ alpha bundles › Spectrin repeat-like › Tubulin chaperone cofactor A › Tubulin chaperone cofactor A › TBCA 0.71 48.0 4.31e-01 71.8% 50.0%
2795737 5041.1.1.1 ↗ extended segments › F1F0 ATP synthase subunit C › F1F0 ATP synthase subunit C › F1F0 ATP synthase subunit C › ATP-synt_C 0.70 48.0 5.00e-01 71.8% 86.3%
3551747 192.7.1.0 ↗ alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm 0.68 48.0 4.04e-01 74.4% 51.9%
3616669 604.1.1.0 ↗ alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.68 46.0 4.09e-01 70.5% 50.4%
3979154 192.1.1.2 ↗ alpha bundles › Long alpha-hairpin › GreA transcript cleavage protein, N-terminal domain › GreA transcript cleavage protein, N-terminal domain › GreA_GreB_N 0.68 44.0 4.45e-01 70.5% 65.0%
3253427 5041.1.1.1 ↗ extended segments › F1F0 ATP synthase subunit C › F1F0 ATP synthase subunit C › F1F0 ATP synthase subunit C › ATP-synt_C 0.67 47.0 4.57e-01 74.4% 76.1%
4805104 601.19.1.1 ↗ alpha bundles › Four-helical up-and-down bundle › Apolipoprotein › Apolipoprotein › Apolipoprotein 0.67 45.0 4.49e-01 70.5% 72.3%
3596488 3737.1.1.0 ↗ alpha duplicates or obligate multimers › Major allergen Bla g 1 tandem repeats › Major allergen Bla g 1 tandem repeats › Major allergen Bla g 1 tandem repeats 0.66 57.0 4.88e-01 97.4% 98.4%
4933737 3567.1.1.192 ↗ a+b duplicates or obligate multimers › MPER trimer › MPER trimer › MPER trimer › EMC3_TMCO1 0.66 45.0 4.32e-01 73.1% 89.5%
3975851 192.8.1.0 ↗ alpha bundles › Long alpha-hairpin › Eukaryotic DNA topoisomerase I, dispensable insert domain › Eukaryotic DNA topoisomerase I, dispensable insert domain 0.65 45.0 4.69e-01 73.1% 80.0%
3690443 192.4.1.0 ↗ alpha bundles › Long alpha-hairpin › Ribosomal protein L29 (L29p) › Ribosomal protein L29 (L29p) 0.65 45.0 4.08e-01 71.8% 53.3%
3191997 5041.1.1.15 ↗ extended segments › F1F0 ATP synthase subunit C › F1F0 ATP synthase subunit C › F1F0 ATP synthase subunit C › Tmemb_170 0.65 45.0 4.02e-01 79.5% 50.9%
4933898 5041.1.1.1 ↗ extended segments › F1F0 ATP synthase subunit C › F1F0 ATP synthase subunit C › F1F0 ATP synthase subunit C › ATP-synt_C 0.65 44.0 4.50e-01 71.8% 82.1%
2482296 192.7.1.2 ↗ alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm › Seryl_tRNA_N 0.64 51.0 4.55e-01 87.2% 90.9%
4996722 5058.1.1.0 ↗ alpha bundles › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region 0.64 46.0 4.26e-01 74.4% 69.5%
3292032 633.4.1.1 ↗ alpha bundles › Bromodomain-like › Plant invertase/pectin methylesterase inhibitor › Plant invertase/pectin methylesterase inhibitor › PMEI 0.63 48.0 4.26e-01 80.8% 73.6%
4853348 5001.1.1.1 ↗ alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1 0.63 44.0 4.28e-01 71.8% 74.1%
5010354 5041.1.1.1 ↗ extended segments › F1F0 ATP synthase subunit C › F1F0 ATP synthase subunit C › F1F0 ATP synthase subunit C › ATP-synt_C 0.63 43.0 4.33e-01 71.8% 78.8%
2572867 192.7.1.2 ↗ alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm › Seryl_tRNA_N 0.61 50.0 4.47e-01 91.0% 92.8%
3417987 601.1.2.8 ↗ alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › I/LWEQ domain (Pfam 01608) › PGG 0.60 51.0 4.55e-01 94.9% 91.3%
4964132 5058.1.1.0 ↗ alpha bundles › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region 0.60 44.0 3.97e-01 75.6% 63.8%
4956383 5041.1.1.1 ↗ extended segments › F1F0 ATP synthase subunit C › F1F0 ATP synthase subunit C › F1F0 ATP synthase subunit C › ATP-synt_C 0.60 52.0 4.73e-01 97.4% 93.3%
3739839 5063.1.1.0 ↗ alpha bundles › Photosystem I reaction center subunit X, PsaK › Photosystem I reaction center subunit X, PsaK › Photosystem I reaction center subunit X, PsaK 0.50 42.0 3.85e-01 97.4% 86.4%
D5 medium residues 275-308_343-381
PDB
Domain cluster: representative
Pfam (2)
AccessionNameScoreE-valueQ covHMM cov
PF05788.19 best Orbi_VP1 43.0 1.70e-11 53.4% 2.9%
PF05788.19 Orbi_VP1 37.2 9.30e-10 50.7% 2.8%
ECOD (1)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4905 4963.1.1.2 ↗ alpha complex topology › N-terminal additional helical subdomain in reovirus polymerase lambda3 › N-terminal additional helical subdomain in reovirus polymerase lambda3 › N-terminal additional helical subdomain in reovirus polymerase lambda3 › RdRP_5 0.60 51.0 3.33e-01 100.0% 23.7%
D6 medium residues 406-433_615-655
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF05788.19 best Orbi_VP1 65.7 2.40e-18 62.3% 3.2%
CATH (6)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1vq8P03 1.10.1200.60 Mainly Alpha › Orthogonal Bundle › Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A › 0.65 39.0 4.38e-01 81.2% 76.4%
6tkyA03 1.20.58.740 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › DOCK DHR2 domain, lobe C 0.64 46.0 3.79e-01 75.4% 91.0%
2rfqB01 1.10.540.10 Mainly Alpha › Orthogonal Bundle › Butyryl-Coa Dehydrogenase, subunit A; domain 1 › Acyl-CoA dehydrogenase/oxidase, N-terminal domain 0.57 44.0 3.81e-01 84.1% 91.7%
5idjA01 1.10.287.130 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Signal transduction histidine kinase, dimerisation/phosphotransfer (DHp) domain 0.56 35.0 3.50e-01 76.8% 59.5%
3w8hB00 1.10.12.70 Mainly Alpha › Orthogonal Bundle › Lyase 2-enoyl-coa Hydratase; Chain A, domain 2 › 0.55 34.0 3.46e-01 72.5% 63.6%
3gfaA00 3.40.109.10 Alpha Beta › 3-Layer(aba) Sandwich › NADH Oxidase › NADH Oxidase 0.51 38.0 2.75e-01 81.2% 28.1%
ECOD (3)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3175569 4307.1.1.0 ↗ alpha duplicates or obligate multimers › EB1 dimerisation domain-like › EB1 dimerisation domain-like › EB1 dimerisation domain-like 0.63 48.0 4.37e-01 88.4% 60.0%
3936611 192.15.1.0 ↗ alpha bundles › Long alpha-hairpin › Endosomal sorting complex assembly domains › Endosomal sorting complex assembly domains 0.58 39.0 3.67e-01 71.0% 58.7%
4937068 4146.1.1.0 ↗ alpha bundles › YqgQ-like › YqgQ-like › YqgQ-like 0.57 34.0 3.66e-01 87.0% 70.0%
D7 medium residues 590-614_722-837
PDB
Domain cluster: rep: KR816341.1__AKQ06880.1__X__00021__D162-195_238-325
Pfam (2)
AccessionNameScoreE-valueQ covHMM cov
PF05788.19 best Orbi_VP1 219.5 8.80e-65 83.0% 8.9%
PF05788.19 Orbi_VP1 39.0 2.70e-10 18.4% 1.9%
D8 medium residues 1111-1251
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF05788.19 best Orbi_VP1 263.0 6.50e-78 100.0% 10.8%
CATH (4)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1tfeA02 1.10.286.20 Mainly Alpha › Orthogonal Bundle › GTP Cyclohydrolase I; Chain A, domain 1 › 0.71 23.0 4.23e-01 97.2% 95.6%
3lcnB00 1.10.340.40 Mainly Alpha › Orthogonal Bundle › Endonuclease III; domain 1 › Nuclear abundant poly(A) RNA-bind protein 2, N-terminal domain 0.69 38.0 4.49e-01 79.4% 77.3%
1o4xA02 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.65 27.0 4.04e-01 70.9% 98.1%
4gkfA00 1.10.520.30 Mainly Alpha › Orthogonal Bundle › Peroxidase; domain 1 › AF1862-like domain 0.56 33.0 3.36e-01 82.3% 56.2%
ECOD (3)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5030241 101.35.1.0 ↗ alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX 0.66 28.0 4.10e-01 70.2% 90.0%
160865 101.1.1.1 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Homeodomain 0.62 30.0 3.72e-01 73.8% 75.0%
4946863 3896.1.1.2 ↗ alpha duplicates or obligate multimers › Intramembrane CDP-DAG synthetase-related › Intramembrane CDP-DAG synthetase-related › Intramembrane CDP-DAG synthetase › DUF92 0.55 44.0 3.77e-01 86.5% 95.7%
D9 medium residues 1262-1300
PDB