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VP1

Euk-Vir

Betapolyomavirus_canis

VP1__YP_009362021__Betapolyomavirus_canis__1980633

Identity

Accession:
YP_009362021 ↗
Protein ID:
VP1
Kingdom:
euk

Quality

80.1 mean pLDDT

Taxonomy

Shotokuvirae› Cossaviricota› Papovaviricetes› Sepolyvirales› Polyomaviridae› Betapolyomavirus› Betapolyomavirus_canis

TaxID: 1980633

Cluster

View cluster (117 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 18-52_78-108_193-255_270-345
PDB
Domain cluster: rep: VP1__YP_009325930__Betapolyomavirus_securanorvegicus__1919247__D30-309
Pfam (3)
AccessionNameScoreE-valueQ covHMM cov
PF00718.29 best Polyoma_coat 176.0 1.30e-51 49.3% 38.9%
PF00718.29 Polyoma_coat 45.2 8.90e-12 18.1% 11.2%
PF00718.29 Polyoma_coat 34.4 1.80e-08 17.1% 10.8%
CATH (4)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3s7vC00 2.60.175.10 Mainly Beta › Sandwich › Polyomavirus Vp1; Chain A › Capsid protein VP1,Polyomavirus 0.93 64.0 5.77e-01 70.2% 100.0%
1sidF00 2.60.175.10 Mainly Beta › Sandwich › Polyomavirus Vp1; Chain A › Capsid protein VP1,Polyomavirus 0.91 64.0 5.15e-01 71.7% 81.1%
4yrdA02 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.55 29.0 3.73e-01 75.6% 85.7%
4rs5A00 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.51 37.0 3.69e-01 75.6% 87.3%
ECOD (6)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
423236 10.2.1.6 ↗ beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Polyoma_coat 0.90 63.0 5.66e-01 71.2% 100.0%
2666438 10.2.1.6 ↗ beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Polyoma_coat 0.90 65.0 5.28e-01 73.2% 85.6%
2707156 10.2.1.4 ↗ beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Late_protein_L1 0.71 63.0 4.69e-01 93.2% 93.8%
4567712 10.32.1.48 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › CBM_26 0.55 32.0 4.05e-01 85.9% 94.4%
4619601 10.32.1.48 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › CBM_26 0.54 32.0 3.96e-01 86.3% 93.6%
4145033 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.50 34.0 3.87e-01 87.8% 92.7%
D2 medium residues 53-77_109-192_256-269
PDB
Domain cluster: rep: major_structural_protein_VP1__YP_007346983__Otomops_polyomavirus_KY157__2035999__D87-106_144-241_279-300
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF00718.29 best Polyoma_coat 75.9 4.20e-21 70.7% 28.0%
CATH (2)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1sidF00 2.60.175.10 Mainly Beta › Sandwich › Polyomavirus Vp1; Chain A › Capsid protein VP1,Polyomavirus 0.96 93.0 6.34e-01 100.0% 63.6%
3s7vC00 2.60.175.10 Mainly Beta › Sandwich › Polyomavirus Vp1; Chain A › Capsid protein VP1,Polyomavirus 0.78 75.0 5.60e-01 100.0% 78.0%
ECOD (2)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
2666438 10.2.1.6 ↗ beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Polyoma_coat 0.97 94.0 6.48e-01 100.0% 66.2%
961478 10.2.1.6 ↗ beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Polyoma_coat 0.94 91.0 6.85e-01 99.2% 84.2%