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VP1
Euk-VirCalifornia_sea_lion_bocavirus_3
VP1__YP_009507356__California_sea_lion_bocavirus_3__1073961
Identity
- Accession:
- YP_009507356 ↗
- Protein ID:
- VP1
- Kingdom:
- euk
Quality
77.1
mean pLDDT
Taxonomy
Shotokuvirae›
Cossaviricota›
Quintoviricetes›
Piccovirales›
Parvoviridae›
Bocaparvovirus›
California_sea_lion_bocavirus_3
TaxID: 1073961
Cluster
View cluster (92 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 189-393_595-644_646-708
Domain cluster:
rep: VP2__YP_009508801__Miniopterus_schreibersii_bat_bocavirus__1911554__D51-253_470-529
Pfam (2)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00740.24 best | VP1_2 | 137.8 | 6.10e-40 | 66.3% | 39.2% |
| PF00740.24 | VP1_2 | 27.6 | 1.60e-06 | 33.0% | 14.5% |
D2
medium
residues 9-94
Domain cluster:
rep: capsid_protein_VP1__YP_009508795__Bat_bocavirus_XM30__2259811__D8-95
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF08398.16 best | Phospholip_A2_4 | 89.9 | 1.40e-25 | 93.0% | 98.8% |
D3
medium
residues 398-453
Domain cluster:
rep: VP2__YP_010087790__Primate_bocaparvovirus_3__2654204__D244-293