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VP1
Euk-VirCalifornia_sea_lion_adeno-associated_virus_1
VP1__YP_009507367__California_sea_lion_adeno-associated_virus_1__1073950
Identity
- Accession:
- YP_009507367 ↗
- Protein ID:
- VP1
- Kingdom:
- euk
Quality
72.7
mean pLDDT
Taxonomy
Shotokuvirae›
Cossaviricota›
Quintoviricetes›
Piccovirales›
Parvoviridae›
Dependoparvovirus›
California_sea_lion_adeno-associated_virus_1
TaxID: 1073950
Cluster
View cluster (92 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 43-137
Domain cluster:
rep: capsid_protein_VP1__YP_009508795__Bat_bocavirus_XM30__2259811__D8-95
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF08398.16 best | Phospholip_A2_4 | 105.3 | 2.30e-30 | 84.2% | 100.0% |
D2
medium
residues 215-406_594-671
Domain cluster:
rep: VP2__YP_009508801__Miniopterus_schreibersii_bat_bocavirus__1911554__D51-253_470-529
Pfam (2)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00740.24 best | VP1_2 | 223.3 | 7.80e-66 | 71.5% | 40.9% |
| PF00740.24 | VP1_2 | 88.6 | 5.00e-25 | 29.6% | 13.1% |
D3
medium
residues 408-478
Domain cluster:
rep: capsid_protein__YP_077178__Adeno-associated_virus_-_7__202812__D428-485
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00740.24 best | VP1_2 | 45.6 | 5.30e-12 | 100.0% | 12.8% |