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VP1
Euk-VirLupine_bocavirus
VP1__YP_009551695__Lupine_bocavirus__2017714
Identity
- Accession:
- YP_009551695 ↗
- Protein ID:
- VP1
- Kingdom:
- euk
Quality
67.7
mean pLDDT
Taxonomy
Shotokuvirae›
Cossaviricota›
Quintoviricetes›
Piccovirales›
Parvoviridae›
Bocaparvovirus›
Lupine_bocavirus
TaxID: 2017714
Cluster
View cluster (92 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 6-98
Domain cluster:
rep: capsid_protein_VP1__YP_009508795__Bat_bocavirus_XM30__2259811__D8-95
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF08398.16 best | Phospholip_A2_4 | 100.6 | 6.60e-29 | 86.0% | 100.0% |
D2
medium
residues 178-210_264-321_365-401_599-637
Domain cluster:
rep: VP2__YP_009508801__Miniopterus_schreibersii_bat_bocavirus__1911554__D51-253_470-529
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00740.24 best | VP1_2 | 31.9 | 7.70e-08 | 40.7% | 11.8% |
D3
medium
residues 211-263_322-364
Domain cluster:
rep: VP1__YP_009507360__Bocavirus_pig_SX_China_2010__912967__D144-168_258-294
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00740.24 best | VP1_2 | 31.8 | 8.30e-08 | 63.5% | 7.8% |
D4
medium
residues 402-466_482-534
D5
medium
residues 638-695
Domain cluster:
rep: VP2__YP_002808457__Human_bocavirus_3__638313__D489-539