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VP1
Euk-VirNorovirus_GI
VP1__YP_009700094__Norovirus_GI__122928
Identity
- Accession:
- YP_009700094 ↗
- Protein ID:
- VP1
- Kingdom:
- euk
Quality
72.0
mean pLDDT
Taxonomy
Orthornavirae›
Pisuviricota›
Pisoniviricetes›
Picornavirales›
Caliciviridae›
Norovirus›
Norovirus_GI
TaxID: 122928
Cluster
View cluster (17 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 45-221
Domain cluster:
rep: structural_polyprotein__YP_009333175__Bastrovirus-like_virus_VietNam_Bat_17819_21__1906170__D141-305
Pfam (2)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00915.27 best | Calici_coat | 243.5 | 3.20e-72 | 100.0% | 58.6% |
| PF00073.27 | Rhv | 34.3 | 2.60e-08 | 54.8% | 49.1% |
D2
medium
residues 235-284_396-529
Domain cluster:
rep: VP1__YP_009679035__Norovirus_GII_Hu_JP_2007_GII.P15_GII.15_Sapporo_HK299__1529918__D230-281_420-543
Pfam (2)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF08435.18 best | Calici_coat_C | 228.7 | 9.70e-68 | 95.7% | 58.7% |
| PF00915.27 | Calici_coat | 25.1 | 1.10e-05 | 33.1% | 16.4% |
D3
medium
residues 285-395