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VP1
Euk-VirNorovirus_GI
VP1__YP_009700103__Norovirus_GI__122928
Identity
- Accession:
- YP_009700103 ↗
- Protein ID:
- VP1
- Kingdom:
- euk
Quality
79.7
mean pLDDT
Taxonomy
Orthornavirae›
Pisuviricota›
Pisoniviricetes›
Picornavirales›
Caliciviridae›
Norovirus›
Norovirus_GI
TaxID: 122928
Cluster
View cluster (17 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 49-220
Domain cluster:
rep: structural_polyprotein__YP_009333175__Bastrovirus-like_virus_VietNam_Bat_17819_21__1906170__D141-305
Pfam (2)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00915.27 best | Calici_coat | 232.7 | 6.00e-69 | 100.0% | 56.9% |
| PF00073.27 | Rhv | 36.7 | 4.90e-09 | 56.4% | 47.9% |
D2
medium
residues 235-288_396-533
Domain cluster:
rep: VP1__YP_009679035__Norovirus_GII_Hu_JP_2007_GII.P15_GII.15_Sapporo_HK299__1529918__D230-281_420-543
Pfam (2)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF08435.18 best | Calici_coat_C | 231.9 | 1.00e-68 | 96.9% | 65.2% |
| PF00915.27 | Calici_coat | 24.8 | 1.40e-05 | 30.7% | 17.1% |
D3
medium
residues 289-395
Domain cluster:
rep: VP1_capsid_protein__YP_009679041__Norovirus_dog_GVI.1_HKU_Ca026F_2007_HKG__673457__D281-384
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF08435.18 best | Calici_coat_C | 70.4 | 2.40e-19 | 83.2% | 36.5% |