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VP1
Euk-VirNorovirus_GII
VP1__YP_009701446__Norovirus_GII__122929
Identity
- Accession:
- YP_009701446 ↗
- Protein ID:
- VP1
- Kingdom:
- euk
Quality
82.8
mean pLDDT
Taxonomy
Orthornavirae›
Pisuviricota›
Pisoniviricetes›
Picornavirales›
Caliciviridae›
Norovirus›
Norovirus_GII
TaxID: 122929
Cluster
View cluster (17 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 50-215
Domain cluster:
rep: structural_polyprotein__YP_009333175__Bastrovirus-like_virus_VietNam_Bat_17819_21__1906170__D141-305
Pfam (2)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00915.27 best | Calici_coat | 193.1 | 7.20e-57 | 100.0% | 54.8% |
| PF00073.27 | Rhv | 37.9 | 2.10e-09 | 75.9% | 47.4% |
D2
medium
residues 229-287_403-536
Domain cluster:
rep: VP1__YP_009679035__Norovirus_GII_Hu_JP_2007_GII.P15_GII.15_Sapporo_HK299__1529918__D230-281_420-543
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF08435.18 best | Calici_coat_C | 241.2 | 1.50e-71 | 87.1% | 58.7% |
D3
medium
residues 288-402
Domain cluster:
rep: VP1_capsid_protein__YP_009679041__Norovirus_dog_GVI.1_HKU_Ca026F_2007_HKG__673457__D281-384
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF08435.18 best | Calici_coat_C | 63.2 | 3.70e-17 | 82.6% | 37.0% |