VP1

Euk-Vir

Primate_bocaparvovirus_3

VP1__YP_010087789__Primate_bocaparvovirus_3__2654204

Identity

75.4 mean pLDDT

Shotokuvirae› Cossaviricota› Quintoviricetes› Piccovirales› Parvoviridae› Bocaparvovirus› Bocaparvovirus_primate3

TaxID: 2654204

View cluster (92 members)

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high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 33-95

PDB

Domain cluster: rep: capsid_protein_VP1__YP_009508795__Bat_bocavirus_XM30__2259811__D8-95

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF08398.16 best	Phospholip_A2_4	65.5	6.10e-18	88.9%	68.8%

D2 medium residues 176-193_248-304_356-366_538-608

PDB

Domain cluster: rep: VP2__YP_009508801__Miniopterus_schreibersii_bat_bocavirus__1911554__D51-253_470-529

D3 medium residues 194-247_305-355_367-377

PDB

Domain cluster: rep: VP2__YP_010087790__Primate_bocaparvovirus_3__2654204__D72-103_156-226

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF00740.24 best	VP1_2	34.4	1.40e-08	43.1%	6.3%

D4 medium residues 378-410_488-537

PDB

Domain cluster: representative

ECOD (1)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2707659	10.2.1.9 ↗	beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Parvo_coat	0.87	81.0	4.84e-01	100.0%	30.8%

D5 medium residues 411-487

PDB