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VP1_protein
Euk-VirChimpanzee_polyomavirus_Bob
VP1_protein__YP_004046682__Chimpanzee_polyomavirus_Bob__2035845
Identity
- Accession:
- YP_004046682 ↗
- Protein ID:
- VP1_protein
- Kingdom:
- euk
Quality
70.7
mean pLDDT
Taxonomy
Shotokuvirae›
Cossaviricota›
Papovaviricetes›
Sepolyvirales›
Polyomaviridae›
Alphapolyomavirus›
Chimpanzee_polyomavirus_Bob
TaxID: 2035845
Cluster
View cluster (117 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 97-179_219-355
Domain cluster:
rep: VP1__YP_009030020__New_Jersey_polyomavirus-2013__1497391__D86-102_152-364
Pfam (2)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00718.29 best | Polyoma_coat | 232.9 | 6.10e-69 | 58.2% | 42.6% |
| PF00718.29 | Polyoma_coat | 125.9 | 2.40e-36 | 39.1% | 27.4% |
D2
medium
residues 356-384
Domain cluster:
representative
CATH (1)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3ir4A01 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.52 | 39.0 | 3.10e-01 | 100.0% | 47.4% |