VP1_protein

Euk-Vir

Victorian_trout_aquabirnavirus

VP1_protein__YP_009255399__Victorian_trout_aquabirnavirus__1661392

Identity

70.7 mean pLDDT

Orthornavirae› Birnaviridae› Aquabirnavirus› Victorian_trout_aquabirnavirus

TaxID: 1661392

View cluster (6 members)

Download PDB Download Scores JSON

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 68-157

PDB

D2 medium residues 186-209_404-427_472-512

PDB

Domain cluster: representative

Pfam (2)

Accession	Name	Score	E-value	Q cov	HMM cov
PF04197.18 best	Birna_RdRp_palm	64.6	1.20e-17	48.3%	8.1%
PF04197.18	Birna_RdRp_palm	45.7	6.50e-12	32.6%	5.3%

CATH (6)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3fbzA01	1.20.58.800	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 ›	0.60	35.0	3.33e-01	80.9%	49.0%
2wzkA03	1.20.1310.10	Mainly Alpha › Up-down Bundle › 5 helical Cullin repeat like › Cullin Repeats	0.57	38.0	3.54e-01	97.8%	54.5%
3kavA00	1.20.1270.360	Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 ›	0.56	33.0	3.15e-01	79.8%	51.0%
2odmA00	1.10.287.750	Mainly Alpha › Orthogonal Bundle › Helix Hairpins › SO2669-like	0.56	36.0	3.84e-01	97.8%	74.7%
3q5dA02	1.20.58.420	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › AHSP	0.55	39.0	3.79e-01	96.6%	67.0%
5k29A00	1.20.920.10	Mainly Alpha › Up-down Bundle › Histone Acetyltransferase; Chain A › Bromodomain-like	0.52	36.0	3.60e-01	100.0%	67.0%

ECOD (4)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
1145898	304.48.2.1 ↗	a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › 'palm' domain in birnaviruse RNA-dependent RNA polymerase › Birna_RdRp_palm	0.98	96.0	5.67e-01	100.0%	63.7%
3708255	101.1.1.0 ↗	alpha arrays › HTH › HTH › Three-helical HTH	0.57	32.0	3.52e-01	97.8%	64.0%
3929122	188.1.1.1 ↗	alpha arrays › Nuclear receptor ligand-binding domain › Nuclear receptor ligand-binding domain › Nuclear receptor ligand-binding domain › Hormone_recep	0.57	39.0	2.88e-01	95.5%	26.1%
4024058	4156.1.1.0 ↗	alpha arrays › Sec63 N-terminal subdomain-like › Sec63 N-terminal subdomain-like › Sec63 N-terminal subdomain-like	0.55	38.0	3.11e-01	73.0%	50.3%

D3 medium residues 210-350_428-471

PDB

Domain cluster: rep: VP1_RNA-dependent_RNA_polymerase__NP_690839__Infectious_bursal_disease_virus__10995__D189-259_308-337_421-491

Pfam (2)

Accession	Name	Score	E-value	Q cov	HMM cov
PF04197.18 best	Birna_RdRp_palm	233.4	8.80e-69	77.3%	28.1%
PF04197.18	Birna_RdRp_palm	83.7	2.00e-23	24.3%	8.3%

D4 medium residues 351-403_513-582

PDB

Domain cluster: rep: VP1_protein__YP_009177609__Tasmanian_aquabirnavirus__1721090__D358-396_515-582

Pfam (2)

Accession	Name	Score	E-value	Q cov	HMM cov
PF04197.18 best	Birna_RdRp_palm	79.6	3.40e-22	49.6%	9.4%
PF20488.4	Birna_VP1_thumb	97.6	9.60e-28	48.8%	35.9%

D5 medium residues 583-686

PDB

Domain cluster: rep: VP1_RNA-dependent_RNA_polymerase__NP_690839__Infectious_bursal_disease_virus__10995__D603-698

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF20488.4 best	Birna_VP1_thumb	174.4	2.40e-51	100.0%	63.5%